ViewGene
Locus Name:
GeneID:
Location:

GeneID:555
TrivialName: PA14_32780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32780
PAO1 Ortholog Locus:PA2463
Sequence Length:1698
Protein Length:565
Start: 2846758
Stop: 2848455
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05851.1|AE004674_1 (AE004674) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 561/565 (99%), Positives = 563/565 (99%)
Sequence:
ATGTTGCGTTCTAGCTATCGAGCGGTTGTCGCTGGCTTGGTTTTACTGCCGCTTCTTGCCAGCGCCGCCCCC
TTCACCTCCCCCGGCGACCGCGACCTGATCCGCGACCGCCAGCAGCGCCTGCTGGACGAACAGCGCAAGCGC
CTGGAGGAACTCCAGCAACTGCCCGGCAAGGGAGCGCCCGCCGCTGCGGATGCCTCCGGCGACGACGAGCGC
TGCTTCGAGATCCGCCGCATCGAGCTGGAAGGCGCCGGGCACCTCGGCGAAAGCGCGCGTCGCCAGTTGCTG
GCGCCCTACCAGGGGCGCTGCCTGGGCGTCGGCCAGCTCAATGCGCTGCTCAAGGCCGTCACCGACCATTAC
CTGGATCGCGGCTACGTCACCACCCGCGCCTACCTGCCACAGCAGGACCTGGCCTCCGGGACCCTGCGCATC
ATCGTCGTCGAAGGCCGCCTGGAGGGCCTGGACAGCTCCGCGCTGGCCAGCCCGCGCGAACTGGCGATGAGC
TTTCCGGGCAGGACCGGCGAGTTGCTCGACCTGCGCGAACTGGAGCAACTGGTCGACCAGTTGAGTCGCCTG
CCGTCGCGCCAGGCGCAACTGGAGCTGGTGCCCGGCAGCGAGGTCGGCGGCAGTCGGGTGCGTCTCAAGGGC
GAGCGCGACAAGCCCTGGCGGGTCTCCGCCACGCGCAACAACGACGGCGACGTCAGCACCGGCGAGCAGCAG
ATGGGCCTGGGCCTGGACTGGGACAGCCCGCTGGGCCTGGCCGACCAGCTCAACCTGCGCGCCAACCGCGAC
GCGGTGACCGACCGCTGGCGCCATTCCGACAGCCAGAGCCTGTTCTACAGCCTGCCCTGGGGCTGGTGGACC
TTCACCTACGGCTACAGCCAGAGCGACTACCGCACGCGCAACGAGGCCAGCGGCTTCCCCTTCAAGCTCGAT
GGCGACAGCCGCAGCCACCAGTTCCGCGCCGAACGCGTGCTGCACCGCGACGGCGTGAGCAAGACCGCCATG
AGCCTGGGGCTCAGCCACCAGCGCACCAACAACTATGTCGAAGACACCCGCCTGGAAGACCAGAGCACGCGG
ATCACCGAGACCCAGCTCGGCTTCAACCATGGCCGGCGGATCGGCAGTGGCTTCGTCAACCTCGACCTCGGC
TGGCAGCAGGGCATCGGCGCCCTTGGCGCGCAGGGTCGCGGCCACCCGCAGGCGGGCGATCCGCATGCGCGC
TACGACAAGTACAGCCTGACCCTCAGCTACCTGCAGCCGTTCCAGCTATGGGGCGAGCGCTTCAGCTTCGAC
AGCCTGGCCACCGGGCAAAGGAGTGAGGACGTGCTGTTCAGCCCGCAGCGCATCAGCCTCGGCGGCAACAGC
TCGGTGCGCGGCTTCAAGGACCAGACCCTGACCGGCGACAGCGGCGGCTACTGGCGCAACCAGTTGCGCTGG
CGGCGTGCGGTGGAATGGGCGCCGCTGCGGCCCTGGCTGCAGGAATACGGCGTGGCCTTCGCCTACGACGTC
GGCGTGATCCGCCACGACCGCTACAACGACGGCGCCAGCGGGCGCATGAGCGGCAACGCCATCGAACTGGAT
GCCCGCGGCCGCTATTTCGCCGCCAGCGTCGGCTTCGCCCGCTCGCTGGAGCGGCCCAGCGCCATCGAGCGG
CGCGAGCACCCGATCTATTTCCGGGTCGACGCGTTCTTCTGA
Translation:
MLRSSYRAVVAGLVLLPLLASAAPFTSPGDRDLIRDRQQRLLDEQRKRLEELQQLPGKGAPAAADASGDDER
CFEIRRIELEGAGHLGESARRQLLAPYQGRCLGVGQLNALLKAVTDHYLDRGYVTTRAYLPQQDLASGTLRI
IVVEGRLEGLDSSALASPRELAMSFPGRTGELLDLRELEQLVDQLSRLPSRQAQLELVPGSEVGGSRVRLKG
ERDKPWRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQLNLRANRDAVTDRWRHSDSQSLFYSLPWGWWT
FTYGYSQSDYRTRNEASGFPFKLDGDSRSHQFRAERVLHRDGVSKTAMSLGLSHQRTNNYVEDTRLEDQSTR
ITETQLGFNHGRRIGSGFVNLDLGWQQGIGALGAQGRGHPQAGDPHARYDKYSLTLSYLQPFQLWGERFSFD
SLATGQRSEDVLFSPQRISLGGNSSVRGFKDQTLTGDSGGYWRNQLRWRRAVEWAPLRPWLQEYGVAFAYDV
GVIRHDRYNDGASGRMSGNAIELDARGRYFAASVGFARSLERPSAIERREHPIYFRVDAFF*
AnnotationID:564GeneID:555
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 16:04:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2463
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking 
and secretion]. Score (bits) = 413, E value = 7e-116.






   
Genomic Context:






   
Comment:


















    ReferenceID:1113




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18255




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:555
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
957
                           PA2463_tr
                           translation of PA2463
                           565
                           99.29
                           99.64
                           0
                           2936.0
     

     
     
38280
                           gb|AAG05851.1|AE004674_1
                           (AE004674) hypothetical protein PA2463 [Pseudomonas aeruginosa PAO1]
                           565
                           99.29
                           99.64
                           0
                           2936.0
     

     
     
958
                           PA0040_tr
                           translation of PA0040
                           565
                           96.63
                           97.52
                           3
                           2859.0
     

     
     
38281
                           gb|AAG03430.1|AE004443_8
                           (AE004443) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           565
                           96.63
                           97.52
                           3
                           2860.0
     

     
     
38282
                           gb|AAO56710.1|
                           (AE016867) hemolysin activator protein, HlyB family [Pseudomonas syringae pv. tomato str. DC3000]
                           570
                           60.00
                           75.61
                           6
                           1771.0
     

     






      

          
GC ORFID: 43557How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2463Glimmer Score: 

          
Start: 2107166Stop: 2105469

          
Length: 1698


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2463 translation of PA2463Homolog Bit Score 1135.0

          
Other Homologs:  t_PA0040 (ORF: BLASTX 1108.0), t_PA2463 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCGTTCTAGCTATCGAGCGGTTGTCGCTGGCTTGGTTTTACTGCCGCTTCTTGCCAGCGCCGCCCCC 
TTCACCTCCCCCGGCGACCGCGACCTGATCCGCGACCGCCAGCAGCGCCTGCTGGACGAACAGCGCAAGCGC 
CTGGAGGAACTCCAGCAACTGCCCGGCAAGGGAGCGCCCGCCGCTGCGGATGCCTCCGGCGACGACGAGCGC 
TGCTTCGAGATCCGCCGCATCGAGCTGGAAGGCGCCGGGCACCTCGGCGAAAGCGCGCGTCGCCAGTTGCTG 
GCGCCCTACCAGGGGCGCTGCCTGGGCGTCGGCCAGCTCAATGCGCTGCTCAAGGCCGTCACCGACCATTAC 
CTGGATCGCGGCTACGTCACCACCCGCGCCTACCTGCCACAGCAGGACCTGGCCTCCGGGACCCTGCGCATC 
ATCGTCGTCGAAGGCCGCCTGGAGGGCCTGGACAGCTCCGCGCTGGCCAGCCCGCGCGAACTGGCGATGAGC 
TTTCCGGGCAGGACCGGCGAGTTGCTCGACCTGCGCGAACTGGAGCAACTGGTCGACCAGTTGAGTCGCCTG 
CCGTCGCGCCAGGCGCAACTGGAGCTGGTGCCCGGCAGCGAGGTCGGCGGCAGTCGGGTGCGTCTCAAGGGC 
GAGCGCGACAAGCCCTGGCGGGTCTCCGCCACGCGCAACAACGACGGCGACGTCAGCACCGGCGAGCAGCAG 
ATGGGCCTGGGCCTGGACTGGGACAGCCCGCTGGGCCTGGCCGACCAGCTCAACCTGCGCGCCAACCGCGAC 
GCGGTGACCGACCGCTGGCGCCATTCCGACAGCCAGAGCCTGTTCTACAGCCTGCCCTGGGGCTGGTGGACC 
TTCACCTACGGCTACAGCCAGAGCGACTACCGCACGCGCAACGAGGCCAGCGGCTTCCCCTTCAAGCTCGAT 
GGCGACAGCCGCAGCCACCAGTTCCGCGCCGAACGCGTGCTGCACCGCGACGGCGTGAGCAAGACCGCCATG 
AGCCTGGGGCTCAGCCACCAGCGCACCAACAACTATGTCGAAGACACCCGCCTGGAAGACCAGAGCACGCGG 
ATCACCGAGACCCAGCTCGGCTTCAACCATGGCCGGCGGATCGGCAGTGGCTTCGTCAACCTCGACCTCGGC 
TGGCAGCAGGGCATCGGCGCCCTTGGCGCGCAGGGTCGCGGCCACCCGCAGGCGGGCGATCCGCATGCGCGC 
TACGACAAGTACAGCCTGACCCTCAGCTACCTGCAGCCGTTCCAGCTATGGGGCGAGCGCTTCAGCTTCGAC 
AGCCTGGCCACCGGGCAAAGGAGTGAGGACGTGCTGTTCAGCCCGCAGCGCATCAGCCTCGGCGGCAACAGC 
TCGGTGCGCGGCTTCAAGGACCAGACCCTGACCGGCGACAGCGGCGGCTACTGGCGCAACCAGTTGCGCTGG 
CGGCGTGCGGTGGAATGGGCGCCGCTGCGGCCCTGGCTGCAGGAATACGGCGTGGCCTTCGCCTACGACGTC 
GGCGTGATCCGCCACGACCGCTACAACGACGGCGCCAGCGGGCGCATGAGCGGCAACGCCATCGAACTGGAT 
GCCCGCGGCCGCTATTTCGCCGCCAGCGTCGGCTTCGCCCGCTCGCTGGAGCGGCCCAGCGCCATCGAGCGG 
CGCGAGCACCCGATCTATTTCCGGGTCGACGCGTTCTTCTGA