ViewGene
Locus Name:
GeneID:
Location:

GeneID:5548
TrivialName: PA14_53570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53570
PAO1 Ortholog Locus:
Sequence Length:777
Protein Length:258
Start: 4751322
Stop: 4750546
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04117.1|AE004508_2 (AE004508) probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
Identities = 134/242 (55%), Positives = 182/242 (75%), Gaps = 1/242 (0%)
Sequence:
ATGCTGCAATTGGCTGCTCGATTGGGTGACCCCCTGGCGACGGCCCTGGATGCGTCTTCGTATGCGAGCTTG
CGTCGGAAACGGCTGGAGGAGGGGATATCCGGGAAGACTCTGAACAACGAACTGGGCTACCTCCGCGCGGTG
TTCAATGAACTGAAGGATCTGGGCCAGATCGACTACGGCAACCCGCTGGCCGGGGTGAAGCTGCTCAAGCTG
CAAGAGCGCGAGCTGTCATGGCTGACTACCGAGCAGATCGGCGAGCTTCTCGACTCTATCCGCAGTCGTTGC
GACAACCCGCATACCGAACTGGTGACGCTGCTCTGCCTGGCTACTGGTGCTCGATGGTCCGAGGCTGAAAAG
CTTCCCGCACACCGACTCCAGGGCAACGTCGTGACCTATGCCGGAACCAAGTCTGGGAAGGTAAGGCACGTG
CCGATTCCACCAGAGCTGGCTAACCGGGCGAGTGCACACTGGCGAATGCATGGCCCGTTCACGTCCTGCATT
ACATCCTTTCGCCGCGCCCTGGATCGCACCACGATTCAACTTCCGCAAGGGCAGGCTAGCCATGCTCTCCGG
CACTCCTTTGCCAGTCACTTCATGATGAATGGCGGCAATATCCTCACGCTCCAGAAGATATTGGGGCATTCG
ACGCTCACGATGACAATGCGCTATGCCCATTTGTACCCAGATCACTTGCAGGACGCGATCAAATTTGGACCG
CTGCGGTGTCTAGGCAGTCGGCAAATAAATTTGTCTGAAGGCTTGATATCAGAATGA
Translation:
MLQLAARLGDPLATALDASSYASLRRKRLEEGISGKTLNNELGYLRAVFNELKDLGQIDYGNPLAGVKLLKL
QERELSWLTTEQIGELLDSIRSRCDNPHTELVTLLCLATGARWSEAEKLPAHRLQGNVVTYAGTKSGKVRHV
PIPPELANRASAHWRMHGPFTSCITSFRRALDRTTIQLPQGQASHALRHSFASHFMMNGGNILTLQKILGHS
TLTMTMRYAHLYPDHLQDAIKFGPLRCLGSRQINLSEGLISE*
AnnotationID:5550GeneID:5548
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 16:04:08
Gene Name:
Confidence Code:3
GeneProduct:putative integrase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00797
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|11351079|pir||H83553  probable bacteriophage integrase PA0728 [Pseudomonas aeruginosa PAO1]
     Length=327
     Score =  279 bits (713),  Expect = 7e-74
     Identities = 134/242 (55%), Positives = 182/242 (75%), Gaps = 1/242 (0%)

gi|9634085|ref|NP_052278.1|  Int [Enterobacteria phage 186]
     Length=336
     Score =  220 bits (560),  Expect = 4e-56
     Identities = 119/243 (48%), Positives = 154/243 (63%), Gaps = 11/243 (4%)






 
Structural Features:
cd00797, HP1_INT_C, Phage HP1 integrase, C-terminal catalytic domain. 
             CD-Length = 158 residues, 100.0% aligned
             Score =  184 bits (468), Expect = 1e-47






   
Genomic Context:






   
Comment:


















    ReferenceID:11082




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28232




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5548
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7893
                           PA0728_tr
                           translation of PA0728
                           342
                           39.47
                           53.80
                           99
                           712.0
     

     
     
197205
                           gb|AAG04117.1|AE004508_2
                           (AE004508) probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
                           342
                           39.47
                           53.80
                           99
                           712.0
     

     
     
197208
                           gb|AAN79405.1|AE016758_9
                           (AE016758) Integrase for prophage [Escherichia coli CFT073]
                           355
                           32.67
                           44.78
                           109
                           519.0
     

     
     
197206
                           gb|AAO70923.1|
                           (AE016845) probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           356
                           32.58
                           45.22
                           104
                           520.0
     

     
     
197207
                           emb|CAD09419.1|
                           (AL627279) probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi]
                           356
                           32.58
                           45.22
                           104
                           520.0
     

     






      

          
GC ORFID: 48550How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 202585Stop: 203361

          
Length: 777


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0728 translation of PA0728Homolog Bit Score 279.0

          
Other Homologs:  t_PA0728 translation of PA0728 (BLASTP 279)

          
GC ORF Sequence

           
ATGCTGCAATTGGCTGCTCGATTGGGTGACCCCCTGGCGACGGCCCTGGATGCGTCTTCGTATGCGAGCTTG 
CGTCGGAAACGGCTGGAGGAGGGGATATCCGGGAAGACTCTGAACAACGAACTGGGCTACCTCCGCGCGGTG 
TTCAATGAACTGAAGGATCTGGGCCAGATCGACTACGGCAACCCGCTGGCCGGGGTGAAGCTGCTCAAGCTG 
CAAGAGCGCGAGCTGTCATGGCTGACTACCGAGCAGATCGGCGAGCTTCTCGACTCTATCCGCAGTCGTTGC 
GACAACCCGCATACCGAACTGGTGACGCTGCTCTGCCTGGCTACTGGTGCTCGATGGTCCGAGGCTGAAAAG 
CTTCCCGCACACCGACTCCAGGGCAACGTCGTGACCTATGCCGGAACCAAGTCTGGGAAGGTAAGGCACGTG 
CCGATTCCACCAGAGCTGGCTAACCGGGCGAGTGCACACTGGCGAATGCATGGCCCGTTCACGTCCTGCATT 
ACATCCTTTCGCCGCGCCCTGGATCGCACCACGATTCAACTTCCGCAAGGGCAGGCTAGCCATGCTCTCCGG 
CACTCCTTTGCCAGTCACTTCATGATGAATGGCGGCAATATCCTCACGCTCCAGAAGATATTGGGGCATTCG 
ACGCTCACGATGACAATGCGCTATGCCCATTTGTACCCAGATCACTTGCAGGACGCGATCAAATTTGGACCG 
CTGCGGTGTCTAGGCAGTCGGCAAATAAATTTGTCTGAAGGCTTGATATCAGAATGA