ViewGene
Locus Name:
GeneID:
Location:

GeneID:5547
TrivialName: PA14_53580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53580
PAO1 Ortholog Locus:
Sequence Length:603
Protein Length:200
Start: 4751681
Stop: 4752283
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO08425.1|AE016813_177 (AE016813) TPR repeat containing protein [Vibrio vulnificus CMCP6]
Identities = 22/83 (26%), Positives = 45/83 (54%)
Sequence:
ATGGCAAAGCGCGAGATCAACGAGCAGCTCAATAGCCTGAGCTTCGACATGGACGAGGAAATCGACGATCGC
AACGAACGTCGAGGCCGCAAAGCCGCGCCACCTCGTCACGCCCACACTCCCATGGACCCCAGCCACGCCATC
ATTCTGGCCGCCATCATCATCGTCGGCGGCCTGTGGGGCGGGAAGCTTCTCTACGACTACATCCAGGAACGG
CGCATCAAGGCCGCCCTCAACGACGCAGCCGCCTATATGCAGCAGACCATGCAGCAAGCCGAGCAAAACTCC
AGACGCGCGAAGGCAGAGATGCAGCAGCGAACAGCGGCTGAGGAAGAGGCCAGAGAACAGCGGCGCGCTGAG
CAACTCGCCCAAGTGCAGGCAGAGCAAGCACGGGTGGCGCAGGAAAAACGCTTCAAATCATCCCAGTGCCAG
TTCTGGTGGCAGCAACACAATCAGAATCCTACGCCGAAATCCGCACAGAGGAAGACCGAATCTTGTGGAGAA
TTACTAGATCATAAATATATTTGGCCGAGTATAAAAAGCACCTCCTTGATTAGAGTCAAAATTAATACCACA
GCAACTAGCAGTCTTTACCTTAACTAG
Translation:
MAKREINEQLNSLSFDMDEEIDDRNERRGRKAAPPRHAHTPMDPSHAIILAAIIIVGGLWGGKLLYDYIQER
RIKAALNDAAAYMQQTMQQAEQNSRRAKAEMQQRTAAEEEAREQRRAEQLAQVQAEQARVAQEKRFKSSQCQ
FWWQQHNQNPTPKSAQRKTESCGELLDHKYIWPSIKSTSLIRVKINTTATSSLYLN*
AnnotationID:5549GeneID:5547
AnnotatorUID: danlee
Modification Date/Time: 2004-04-22 14:02:33
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
no strong homologs.  Absent in PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11080




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28230




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48549How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 202226Stop: 201624

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCAAAGCGCGAGATCAACGAGCAGCTCAATAGCCTGAGCTTCGACATGGACGAGGAAATCGACGATCGC 
AACGAACGTCGAGGCCGCAAAGCCGCGCCACCTCGTCACGCCCACACTCCCATGGACCCCAGCCACGCCATC 
ATTCTGGCCGCCATCATCATCGTCGGCGGCCTGTGGGGCGGGAAGCTTCTCTACGACTACATCCAGGAACGG 
CGCATCAAGGCCGCCCTCAACGACGCAGCCGCCTATATGCAGCAGACCATGCAGCAAGCCGAGCAAAACTCC 
AGACGCGCGAAGGCAGAGATGCAGCAGCGAACAGCGGCTGAGGAAGAGGCCAGAGAACAGCGGCGCGCTGAG 
CAACTCGCCCAAGTGCAGGCAGAGCAAGCACGGGTGGCGCAGGAAAAACGCTTCAAATCATCCCAGTGCCAG 
TTCTGGTGGCAGCAACACAATCAGAATCCTACGCCGAAATCCGCACAGAGGAAGACCGAATCTTGTGGAGAA 
TTACTAGATCATAAATATATTTGGCCGAGTATAAAAAGCACCTCCTTGATTAGAGTCAAAATTAATACCACA 
GCAACTAGCAGTCTTTACCTTAACTAG