ViewGene
Locus Name:
GeneID:
Location:

GeneID:5540
TrivialName: PA14_54050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54050
PAO1 Ortholog Locus:
Sequence Length:666
Protein Length:221
Start: 4794280
Stop: 4793615
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68164.1|AE016448_2 (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 109/210 (51%), Positives = 134/210 (63%), Gaps = 3/210 (1%)
Sequence:
ATGGAGCGCAGCCGACGGCTCGAGCGCAGCTGGCGCGGCAATGCCGAGGCCTGGGCCCGCGCCGTGCGCGAG
GGACGCCTGGAAAGCCGCCGCCTGGCCACCGACGACGCGATTCTCCAGGCGCTGCGCCAGCGCGCGCCGCGG
CGCCTGCTGGATATCGGCTGCGGCGAGGGCTGGCTGTGCCGGGCGCTGGCCGGCGAGGTCGGCGAATGCGTC
GGCATCGACGCCTCGCCGGAACTGATCGAACTCGCCCGCGCGGCGGGCGGCGGTAGCTTCCGGCGCCTGGCC
TACCGCGAGCTGGATGCGGCCTCGGGGCTCGGTCGTTTCGACGCCCTGGTGTGCAATTTCTCCCTGCTCGAC
GAAGACCTTGCCGGTTGCCTGGCGGCCTGGCCGGCTCTGCTGGAAAGCGGCGGCGAGTTGCTGATCCAGACC
CTGCATCCCTGGGCCGCCGGCGACGAGGACTACCGCGACGGCTGGCGCGAGGAGCGCTTCGACGGTTTCGGC
GAAGGCTTCCGCGACAGCATGCCCTGGTATTTCCGCACCCTGGAGTCCTGGCTGGCGCTGCTCGACGGCAGC
GGCTGGCGCCTGCGGGGCCTGAGCGAAACCGTCCATCCCCGGCTCGGCAGGCCGCTGTCCCTGTTGCTGCGG
GCGGGACTCGCCGAATGA
Translation:
MERSRRLERSWRGNAEAWARAVREGRLESRRLATDDAILQALRQRAPRRLLDIGCGEGWLCRALAGEVGECV
GIDASPELIELARAAGGGSFRRLAYRELDAASGLGRFDALVCNFSLLDEDLAGCLAAWPALLESGGELLIQT
LHPWAAGDEDYRDGWREERFDGFGEGFRDSMPWYFRTLESWLALLDGSGWRLRGLSETVHPRLGRPLSLLLR
AGLAE*
AnnotationID:5542GeneID:5540
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 14:02:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
some homology to putative methyltransferases.






 
Structural Features:






   
Genomic Context:






   
Comment:
sequence ABSENT in PAO1.


















    ReferenceID:11066




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28216




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5540
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197203
                           gb|AAN68164.1|AE016448_2
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           230
                           49.56
                           60.86
                           13
                           520.0
     

     
     
197204
                           dbj|BAB77435.1|
                           (AP003604) ORF_ID:all8516~hypothetical protein [Nostoc sp. PCC 7120]
                           229
                           39.30
                           55.45
                           11
                           400.0
     

     






      

          
GC ORFID: 48542How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 159627Stop: 160292

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGAGCGCAGCCGACGGCTCGAGCGCAGCTGGCGCGGCAATGCCGAGGCCTGGGCCCGCGCCGTGCGCGAG 
GGACGCCTGGAAAGCCGCCGCCTGGCCACCGACGACGCGATTCTCCAGGCGCTGCGCCAGCGCGCGCCGCGG 
CGCCTGCTGGATATCGGCTGCGGCGAGGGCTGGCTGTGCCGGGCGCTGGCCGGCGAGGTCGGCGAATGCGTC 
GGCATCGACGCCTCGCCGGAACTGATCGAACTCGCCCGCGCGGCGGGCGGCGGTAGCTTCCGGCGCCTGGCC 
TACCGCGAGCTGGATGCGGCCTCGGGGCTCGGTCGTTTCGACGCCCTGGTGTGCAATTTCTCCCTGCTCGAC 
GAAGACCTTGCCGGTTGCCTGGCGGCCTGGCCGGCTCTGCTGGAAAGCGGCGGCGAGTTGCTGATCCAGACC 
CTGCATCCCTGGGCCGCCGGCGACGAGGACTACCGCGACGGCTGGCGCGAGGAGCGCTTCGACGGTTTCGGC 
GAAGGCTTCCGCGACAGCATGCCCTGGTATTTCCGCACCCTGGAGTCCTGGCTGGCGCTGCTCGACGGCAGC 
GGCTGGCGCCTGCGGGGCCTGAGCGAAACCGTCCATCCCCGGCTCGGCAGGCCGCTGTCCCTGTTGCTGCGG 
GCGGGACTCGCCGAATGA