ViewGene
Locus Name:
GeneID:
Location:

GeneID:554
TrivialName: PA14_06230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06230
PAO1 Ortholog Locus:PA0476
Sequence Length:1728
Protein Length:575
Start: 550668
Stop: 548941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03865.1|AE004485_6 (AE004485) probable permease [Pseudomonas aeruginosa PAO1]
Identities = 574/575 (99%), Positives = 574/575 (99%)
Sequence:
ATGTCCAGCACCCCGAAGCCGCCCGCCTCGCCCCGCGAGTTTTCTCCCTCGCTGCTCGACCTCGGCACCCTG
GAAAGCCTCGACAGCCTGCCGCGCGCCGGTCAGCGGAGCGCGGAGTTCTCCGCCTCACTGCTCGACCTGGGC
ACTCCGGCCAGTCTCGACTGCCTGCCACGCGCCGGGCTGCGCGCAGCGGAGTTCTCGGCGGCGCGCCTGGAC
CTGGGCACTCCCGCCAGTCTCGATTGCCTGCCCCGCGCCAGCCATCACGCCGGCACCGAACTGCCGCCGCTG
AGCCCGCGCCTGTACAGCGCCGATCTCGCCCCGACCAAGGCCGAAGGGCGCCGCTGGGGACGCTACAGCCTG
TTCGCGCTGTGGACCAACGATGTGCACAACATCGCCAACTACTCCTTCGCCATCGGCCTCTTCGCCCTCGGC
ATGAGCGGTGCGCAGATCCTCGCCGCGCTGGCCCTGGGCGCGCTGATGGTTTACGGGCTGATGAACCTGTCC
GGCTACATGGGCCAGAAGACCGGGCTGCCCTACCCGGTGATGTGCCGCATCGCCTTCGGCATCCACGGCGCG
CAACTCCCCGCGCTGATCCGCGCGGTGATCGCCATCGCCTGGTTCGGCATCCAGACCTATCTCGCCTCCATC
GTCCTGCGCGTGCTGCTGACGGCGATCTGGCCGGGGCTCGCAGCCTACGACCAGGACGCCATCCTCGGGCTG
TCGAGCCTGGGCTGGGCGACCTTCGTCGCCATCTGGTGCGTGCAACTGCTGATCTTCGCCTACGGCATGGAG
ATGGTGCGTCGCTACGAATCCTTCGCCGGACCGGTGATCCTGCTCACCGTCGCCGCCCTCGCCGCCTGGATG
TACCTGCGCGCCGGCGCCTCCATCGCCTGGTCAAGCGGCGAACCCATGAGCGGTTCGCAGATGTGGTTGAAG
ATCTTCGGCGGCGCGGCGTTCTGGGTGACCCTGTACGGCACCATGATCCTGAACTTCTGCGACTTCGCCCGC
GGCTGCCCGGACCGGCGCACCATCAGCGTCGGCAACTTCTGGGGGCTGCCGGTGAACATCCTGCTGTTCGGC
CTGTTCGCGGTGGTCCTCGCCGGCGCCCAGTTCAGGATCGACGGCCAGCTCATCCAGAGCCCCACCGACATC
GTCGCCGCGATCCCCGACACCCTCTTCCTGGTGCTGGCCAGCCTGGCGCTGCTGATCGTCACCGTGGCGGTG
AACATCATGGCCAACTTCGTCGCCCCGGCCTACGTACTCACCAACCTGGCGCCGAACCTGCTGAACTTCCGC
CGCGCCGGGCTGATCAGCGCGACCATCGCAGTGCTGATCCTGCCCTGGCACCTGTACAACAGCCCCGGGGTG
ATCCTCTACTTCCTCGGCGGCCTCGGCGCGCTGCTCGGCCCGCTGTACGGGATCATCATGGTCGACTACTAC
CTGGTGCGGAAAGGCCGGGTGAACCTGCCGGAGCTGTACACCGAAAGCCGCGCCGGCGCCTATCACTACGCG
CGAGGGGTGAACCCGCGGGCCATCGCCGCGTTCGTCCCGGCGGCGATCATCTCCACCCTGCTGGCATTGTTG
CCGGCATTCGCCGAGCTATCGCCGTTCTCCTGGTTCTTCGGCGCCGGCCTGGCCGGCCTGATCCACTATGCC
CTGGCCAAGCGCCGCACGGCCTACCGCGAAGTTTCCGGCGAAGCGATCGCGGTGGACAGCGTGCAGCACTGA
Translation:
MSSTPKPPASPREFSPSLLDLGTLESLDSLPRAGQRSAEFSASLLDLGTPASLDCLPRAGLRAAEFSAARLD
LGTPASLDCLPRASHHAGTELPPLSPRLYSADLAPTKAEGRRWGRYSLFALWTNDVHNIANYSFAIGLFALG
MSGAQILAALALGALMVYGLMNLSGYMGQKTGLPYPVMCRIAFGIHGAQLPALIRAVIAIAWFGIQTYLASI
VLRVLLTAIWPGLAAYDQDAILGLSSLGWATFVAIWCVQLLIFAYGMEMVRRYESFAGPVILLTVAALAAWM
YLRAGASIAWSSGEPMSGSQMWLKIFGGAAFWVTLYGTMILNFCDFARGCPDRRTISVGNFWGLPVNILLFG
LFAVVLAGAQFRIDGQLIQSPTDIVAAIPDTLFLVLASLALLIVTVAVNIMANFVAPAYVLTNLAPNLLNFR
RAGLISATIAVLILPWHLYNSPGVILYFLGGLGALLGPLYGIIMVDYYLVRKGRVNLPELYTESRAGAYHYA
RGVNPRAIAAFVPAAIISTLLALLPAFAELSPFSWFFGAGLAGLIHYALAKRRTAYREVSGEAIAVDSVQH*
AnnotationID:563GeneID:554
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:16
Gene Name:
Confidence Code:3
GeneProduct:putative cytosine/uracil/thiamine/allantoin permeases
Cell Localization:()
Synonyms:PA0476
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1953,pfam02133
Secondary Functional Category(ies): nucleotide biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69889.1|AE016628_2 (AE016790) transporter, NCS1 nucleoside transporter family
           [Pseudomonas putida KT2440]
          Length = 510

 Score =  715 bits (1845), Expect = 0.0
 Identities = 354/509 (69%), Positives = 419/509 (82%), Gaps = 1/509 (0%)

>emb|CAC44678.1| (AL939131) putative allantoin permease [Streptomyces coelicolor
           A3(2)]
          Length = 495

 Score =  572 bits (1473), Expect = e-162
 Identities = 269/474 (56%), Positives = 359/474 (75%)








 
Structural Features:
COG1953, FUI1, Cytosine/uracil/thiamine/allantoin permeases 
[Nucleotide transport and metabolism / Coenzyme metabolism]
CD-Length = 497 residues,  98.2% aligned
Score =  460 bits (1184), Expect = 2e-130
Identities = 201/497 (40%), Positives = 278/497 (55%), Gaps = 15/497 (3%)

pfam02133, Transp_cyt_pur, Permease for cytosine/purines, 
uracil, thiamine, allantoin.
CD-Length = 436 residues,  99.8% aligned
Score =  214 bits (547), Expect = 2e-56
Identities = 150/447 (33%), Positives = 219/447 (48%), Gaps = 12/447 (2%)









   
Genomic Context:






   
Comment:


















    ReferenceID:1111




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18253




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33796




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:554_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:554
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
956
                           PA0476_tr
                           translation of PA0476
                           575
                           99.82
                           99.82
                           0
                           2938.0
     

     
     
38275
                           gb|AAG03865.1|AE004485_6
                           (AE004485) probable permease [Pseudomonas aeruginosa PAO1]
                           575
                           99.82
                           99.82
                           0
                           2938.0
     

     
     
38276
                           gb|AAN69889.1|AE016628_2
                           (AE016790) transporter, NCS1 nucleoside transporter family [Pseudomonas putida KT2440]
                           584
                           60.61
                           71.40
                           83
                           1849.0
     

     
     
38277
                           emb|CAC44678.1|
                           (AL939131) putative allantoin permease [Streptomyces coelicolor A3(2)]
                           577
                           47.31
                           63.43
                           84
                           1464.0
     

     
     
38278
                           gb|AAO55389.1|
                           (AE016862) cytosine/purine/uracil/thiamine/allantoin permease family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           579
                           32.81
                           50.60
                           100
                           951.0
     

     






      

          
GC ORFID: 43556How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0476Glimmer Score: 

          
Start: 6352010Stop: 6350283

          
Length: 1728


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0476 translation of PA0476Homolog Bit Score 1136.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7596 (ORF: BLASTX 372.0), t_PA0476 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAGCACCCCGAAGCCGCCCGCCTCGCCCCGCGAGTTTTCTCCCTCGCTGCTCGACCTCGGCACCCTG 
GAAAGCCTCGACAGCCTGCCGCGCGCCGGTCAGCGGAGCGCGGAGTTCTCCGCCTCACTGCTCGACCTGGGC 
ACTCCGGCCAGTCTCGACTGCCTGCCACGCGCCGGGCTGCGCGCAGCGGAGTTCTCGGCGGCGCGCCTGGAC 
CTGGGCACTCCCGCCAGTCTCGATTGCCTGCCCCGCGCCAGCCATCACGCCGGCACCGAACTGCCGCCGCTG 
AGCCCGCGCCTGTACAGCGCCGATCTCGCCCCGACCAAGGCCGAAGGGCGCCGCTGGGGACGCTACAGCCTG 
TTCGCGCTGTGGACCAACGATGTGCACAACATCGCCAACTACTCCTTCGCCATCGGCCTCTTCGCCCTCGGC 
ATGAGCGGTGCGCAGATCCTCGCCGCGCTGGCCCTGGGCGCGCTGATGGTTTACGGGCTGATGAACCTGTCC 
GGCTACATGGGCCAGAAGACCGGGCTGCCCTACCCGGTGATGTGCCGCATCGCCTTCGGCATCCACGGCGCG 
CAACTCCCCGCGCTGATCCGCGCGGTGATCGCCATCGCCTGGTTCGGCATCCAGACCTATCTCGCCTCCATC 
GTCCTGCGCGTGCTGCTGACGGCGATCTGGCCGGGGCTCGCAGCCTACGACCAGGACGCCATCCTCGGGCTG 
TCGAGCCTGGGCTGGGCGACCTTCGTCGCCATCTGGTGCGTGCAACTGCTGATCTTCGCCTACGGCATGGAG 
ATGGTGCGTCGCTACGAATCCTTCGCCGGACCGGTGATCCTGCTCACCGTCGCCGCCCTCGCCGCCTGGATG 
TACCTGCGCGCCGGCGCCTCCATCGCCTGGTCAAGCGGCGAACCCATGAGCGGTTCGCAGATGTGGTTGAAG 
ATCTTCGGCGGCGCGGCGTTCTGGGTGACCCTGTACGGCACCATGATCCTGAACTTCTGCGACTTCGCCCGC 
GGCTGCCCGGACCGGCGCACCATCAGCGTCGGCAACTTCTGGGGGCTGCCGGTGAACATCCTGCTGTTCGGC 
CTGTTCGCGGTGGTCCTCGCCGGCGCCCAGTTCAGGATCGACGGCCAGCTCATCCAGAGCCCCACCGACATC 
GTCGCCGCGATCCCCGACACCCTCTTCCTGGTGCTGGCCAGCCTGGCGCTGCTGATCGTCACCGTGGCGGTG 
AACATCATGGCCAACTTCGTCGCCCCGGCCTACGTACTCACCAACCTGGCGCCGAACCTGCTGAACTTCCGC 
CGCGCCGGGCTGATCAGCGCGACCATCGCAGTGCTGATCCTGCCCTGGCACCTGTACAACAGCCCCGGGGTG 
ATCCTCTACTTCCTCGGCGGCCTCGGCGCGCTGCTCGGCCCGCTGTACGGGATCATCATGGTCGACTACTAC 
CTGGTGCGGAAAGGCCGGGTGAACCTGCCGGAGCTGTACACCGAAAGCCGCGCCGGCGCCTATCACTACGCG 
CGAGGGGTGAACCCGCGGGCCATCGCCGCGTTCGTCCCGGCGGCGATCATCTCCACCCTGCTGGCATTGTTG 
CCGGCATTCGCCGAGCTATCGCCGTTCTCCTGGTTCTTCGGCGCCGGCCTGGCCGGCCTGATCCACTATGCC 
CTGGCCAAGCGCCGCACGGCCTACCGCGAAGTTTCCGGCGAAGCGATCGCGGTGGACAGCGTGCAGCACTGA