ViewGene
Locus Name:
GeneID:
Location:

GeneID:5538
TrivialName: PA14_54070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54070
PAO1 Ortholog Locus:
Sequence Length:210
Protein Length:69
Start: 4794494
Stop: 4794285
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69965.1|AE016635_1 (AE016790) hypothetical protein [Pseudomonas putida KT2440]
Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Sequence:
ATGTCGATGCGCACACTTTTCCCCCTTCTCGTCGGTGTCGTCCTGGCGGGTTTCTCCGGCCTCGCGGCGCAG
GCCGCGCCGGCGCCCTTCTACAAATGGCAGAGCAAGCTCGACGGCCAGGTCGCCTGCATGCAGACCTCGCCG
GGAGACGGCTGGGTCAGGCTCGACGGCCCCTACCGCGACCTCCGCTGCCGCGAACCCCTGCGCTGA
Translation:
MSMRTLFPLLVGVVLAGFSGLAAQAAPAPFYKWQSKLDGQVACMQTSPGDGWVRLDGPYRDLRCREPLR*
AnnotationID:5540GeneID:5538
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 15:03:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Some homology to putative methyltransferases.






 
Structural Features:






   
Genomic Context:






   
Comment:
Intact ORF present in PAO1 but not annotated.


















    ReferenceID:11062




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28211




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48540How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 159413Stop: 159622

          
Length: 210


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCGATGCGCACACTTTTCCCCCTTCTCGTCGGTGTCGTCCTGGCGGGTTTCTCCGGCCTCGCGGCGCAG 
GCCGCGCCGGCGCCCTTCTACAAATGGCAGAGCAAGCTCGACGGCCAGGTCGCCTGCATGCAGACCTCGCCG 
GGAGACGGCTGGGTCAGGCTCGACGGCCCCTACCGCGACCTCCGCTGCCGCGAACCCCTGCGCTGA