ViewGene
Locus Name:
GeneID:
Location:

GeneID:553
TrivialName: PA14_67350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67350
PAO1 Ortholog Locus:PA5100
Sequence Length:1680
Protein Length:559
Start: 6017011
Stop: 6015332
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08485.1|AE004923_1 (AE004923) urocanase [Pseudomonas aeruginosa PAO1]
Identities = 558/559 (99%), Positives = 559/559 (100%)
Sequence:
GTGACCACCCCGAGCAAATTCCGCGATATTGAAATCCGCGCCCCGCGCGGCACTACGCTGACCGCCAAGAGC
TGGCTGACCGAAGCGCCGCTGCGCATGCTGATGAACAACCTCGACCCGGAGGTCGCGGAGAACCCCAGGGAA
CTGGTGGTTTACGGCGGCATCGGCCGTGCCGCGCGCAACTGGGAGTGCTACGACAGGATCGTCGAGACCCTC
AAGCAACTGAACGACGACGAGACCCTGCTGGTACAGTCCGGCAAGCCGGTTGGCGTGTTCAAGACCCACGCC
AACGCGCCGCGGGTGCTGATCGCCAACTCCAACCTGGTGCCGCACTGGGCGACCTGGGAACACTTCAACGAA
CTGGACGCCAAGGGCCTGGCGATGTACGGCCAGATGACCGCCGGTTCGTGGATCTACATCGGCAGCCAGGGC
ATCGTCCAGGGCACCTACGAAACCTTCGTCGAGGCTGGCCGCCAGCATTACGACGGCAACCTCAAGGGCCGC
TGGGTGCTTACCGCCGGCCTTGGCGGCATGGGCGGCGCCCAGCCGCTGGCGGCGACCCTGGCCGGCGCCTGT
TCGCTGAACATCGAGTGCCAGCAGAGCCGCATCGACTTCCGCCTGCGCAGTCGCTACGTCGACGAGCAGGCC
AAGGACCTGGACGACGCCCTGGCGCGGATCCAGCGCTACACCGCCGAAGGCAAGGCCATCTCCATCGCCCTG
CTGGGCAATGCCGCCGAGATCCTTCCGGAACTGGTTCGCCGCGGCGTACGCCCGGACATGGTCACCGACCAG
ACCAGCGCCCACGATCCGCTCAACGGCTACCTGCCGGCCGGCTGGAGCTGGGAAGAGTACCGCGACCGCGCG
CAGACCGACCCGGCCGCCGTGGTCAAGGCCGCCAAGCAGTCCATGGCGGTACACGTGCGGGCCATGCTGGCG
TTCCAGCAGCAGGGCGTGCCGACCTTCGACTATGGCAACAACATCCGCCAGATGGCCAAGGAAGAGGGGGTG
GCCAATGCCTTCGATTTCCCCGGCTTCGTCCCGGCCTACATCCGCCCGCTGTTCTGTCGCGGCATCGGTCCG
TTCCGCTGGGCCGCGCTGTCGGGCGACCCGCAGGACATCTACAAGACCGACGCCAAGGTCAAGCAACTGATC
CCCGACGATGCCCACCTGCACCGTTGGCTGGACATGGCCCGCGAGCGCATCAGCTTCCAGGGCCTGCCGGCG
CGCATCTGCTGGGTTGGCCTGGGGCTGCGCGCCAAGCTCGGCCTGGCCTTCAACGAGATGGTGCGCAGCGGC
GAGCTGTCCGCACCGATCGTCATCGGCCGCGACCACCTCGACTCCGGCTCGGTGGCCAGCCCCAACCGCGAG
ACCGAGGCCATGCAGGACGGCTCCGACGCGGTGTCCGACTGGCCGCTGCTGAATGCCCTGCTGAATACCGCC
AGCGGCGCCACCTGGGTCTCGCTGCACCACGGCGGCGGCGTGGGCATGGGCTTCTCCCAGCACTCCGGGATG
GTGATCGTCTGCGACGGTAGCGACGAGGCCGCCGAACGCATCGCCCGCGTGCTGACCAACGACCCGGGAACC
GGGGTGATGCGGCACGCCGACGCCGGCTACCAGGTCGCCATCGATTGCGCGAAGGAGCAGGGCCTGAACCTG
CCGATGATCACCGCCCAGCGCTGA
Translation:
MTTPSKFRDIEIRAPRGTTLTAKSWLTEAPLRMLMNNLDPEVAENPRELVVYGGIGRAARNWECYDRIVETL
KQLNDDETLLVQSGKPVGVFKTHANAPRVLIANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQG
IVQGTYETFVEAGRQHYDGNLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRSRYVDEQA
KDLDDALARIQRYTAEGKAISIALLGNAAEILPELVRRGVRPDMVTDQTSAHDPLNGYLPAGWSWEEYRDRA
QTDPAAVVKAAKQSMAVHVRAMLAFQQQGVPTFDYGNNIRQMAKEEGVANAFDFPGFVPAYIRPLFCRGIGP
FRWAALSGDPQDIYKTDAKVKQLIPDDAHLHRWLDMARERISFQGLPARICWVGLGLRAKLGLAFNEMVRSG
ELSAPIVIGRDHLDSGSVASPNRETEAMQDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGM
VIVCDGSDEAAERIARVLTNDPGTGVMRHADAGYQVAIDCAKEQGLNLPMITAQR*
AnnotationID:562GeneID:553
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 12:12:35
Gene Name:hutU
Confidence Code:2
GeneProduct:urocanase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:urocanate hydratase
Functional Category Confidence Code:5
COGs:pfam01175
Secondary Functional Category(ies):
EC Number:4.2.1.49
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam01175, Urocanase, Urocanase.
CD-Length = 555 residues, 100.0% aligned
Score = 1025 bits (2651), Expect = 0.0
Identities = 440/555 (79%), Positives = 484/555 (87%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14159




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18251




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34958




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:553_cdd.html


    		




 
URL:

















    ReferenceID:35811




  
Author/Investigator(s):
        Janiyani KL, Ray MK.





  
Title:
        Cloning, sequencing, and expression of the cold-inducible hutU gene from the antarctic psychrotrophic bacterium Pseudomonas syringae.




  
PubMed:
        11772602


MedLine:
        




    
Source:
Appl Environ Microbiol. 2002 Jan;68(1):1-10.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11772602

















    ReferenceID:35812




  
Author/Investigator(s):
        Fessenmaier M, Frank R, Retey J, Schubert C.





  
Title:
        Cloning and sequencing the urocanase gene (hutU) from Pseudomonas putida.




  
PubMed:
        1677899


MedLine:
        




    
Source:
FEBS Lett. 1991 Jul 29;286(1-2):55-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1677899









           
Homologs By Global Alignment 

           

       



     
Gene ID:553
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
955
                           PA5100_tr
                           translation of PA5100
                           559
                           99.82
                           99.99
                           0
                           2938.0
     

     
     
38226
                           gb|AAG08485.1|AE004923_1
                           (AE004923) urocanase [Pseudomonas aeruginosa PAO1]
                           559
                           99.64
                           99.99
                           0
                           2935.0
     

     
     
38227
                           gb|AAA50311.1|
                           (M33923) urocanase [Pseudomonas putida]
                           559
                           91.23
                           96.42
                           2
                           2737.0
     

     
     
38228
                           gb|AAN70598.1|AE016702_7
                           (AE016793) urocanate hydratase [Pseudomonas putida KT2440]
                           559
                           91.05
                           96.42
                           2
                           2734.0
     

     
     
38229
                           emb|CAA41392.1|
                           (X58483) urocanate hydratase [Pseudomonas putida]
                           559
                           90.87
                           96.06
                           2
                           2727.0
     

     






      

          
GC ORFID: 43555How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5100Glimmer Score: 

          
Start: 5280696Stop: 5279017

          
Length: 1680


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5100 translation of PA5100Homolog Bit Score 1136.0

          
Other Homologs:  t_PA5100 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCACCCCGAGCAAATTCCGCGATATTGAAATCCGCGCCCCGCGCGGCACTACGCTGACCGCCAAGAGC 
TGGCTGACCGAAGCGCCGCTGCGCATGCTGATGAACAACCTCGACCCGGAGGTCGCGGAGAACCCCAGGGAA 
CTGGTGGTTTACGGCGGCATCGGCCGTGCCGCGCGCAACTGGGAGTGCTACGACAGGATCGTCGAGACCCTC 
AAGCAACTGAACGACGACGAGACCCTGCTGGTACAGTCCGGCAAGCCGGTTGGCGTGTTCAAGACCCACGCC 
AACGCGCCGCGGGTGCTGATCGCCAACTCCAACCTGGTGCCGCACTGGGCGACCTGGGAACACTTCAACGAA 
CTGGACGCCAAGGGCCTGGCGATGTACGGCCAGATGACCGCCGGTTCGTGGATCTACATCGGCAGCCAGGGC 
ATCGTCCAGGGCACCTACGAAACCTTCGTCGAGGCTGGCCGCCAGCATTACGACGGCAACCTCAAGGGCCGC 
TGGGTGCTTACCGCCGGCCTTGGCGGCATGGGCGGCGCCCAGCCGCTGGCGGCGACCCTGGCCGGCGCCTGT 
TCGCTGAACATCGAGTGCCAGCAGAGCCGCATCGACTTCCGCCTGCGCAGTCGCTACGTCGACGAGCAGGCC 
AAGGACCTGGACGACGCCCTGGCGCGGATCCAGCGCTACACCGCCGAAGGCAAGGCCATCTCCATCGCCCTG 
CTGGGCAATGCCGCCGAGATCCTTCCGGAACTGGTTCGCCGCGGCGTACGCCCGGACATGGTCACCGACCAG 
ACCAGCGCCCACGATCCGCTCAACGGCTACCTGCCGGCCGGCTGGAGCTGGGAAGAGTACCGCGACCGCGCG 
CAGACCGACCCGGCCGCCGTGGTCAAGGCCGCCAAGCAGTCCATGGCGGTACACGTGCGGGCCATGCTGGCG 
TTCCAGCAGCAGGGCGTGCCGACCTTCGACTATGGCAACAACATCCGCCAGATGGCCAAGGAAGAGGGGGTG 
GCCAATGCCTTCGATTTCCCCGGCTTCGTCCCGGCCTACATCCGCCCGCTGTTCTGTCGCGGCATCGGTCCG 
TTCCGCTGGGCCGCGCTGTCGGGCGACCCGCAGGACATCTACAAGACCGACGCCAAGGTCAAGCAACTGATC 
CCCGACGATGCCCACCTGCACCGTTGGCTGGACATGGCCCGCGAGCGCATCAGCTTCCAGGGCCTGCCGGCG 
CGCATCTGCTGGGTTGGCCTGGGGCTGCGCGCCAAGCTCGGCCTGGCCTTCAACGAGATGGTGCGCAGCGGC 
GAGCTGTCCGCACCGATCGTCATCGGCCGCGACCACCTCGACTCCGGCTCGGTGGCCAGCCCCAACCGCGAG 
ACCGAGGCCATGCAGGACGGCTCCGACGCGGTGTCCGACTGGCCGCTGCTGAATGCCCTGCTGAATACCGCC 
AGCGGCGCCACCTGGGTCTCGCTGCACCACGGCGGCGGCGTGGGCATGGGCTTCTCCCAGCACTCCGGGATG 
GTGATCGTCTGCGACGGTAGCGACGAGGCCGCCGAACGCATCGCCCGCGTGCTGACCAACGACCCGGGAACC 
GGGGTGATGCGGCACGCCGACGCCGGCTACCAGGTCGCCATCGATTGCGCGAAGGAGCAGGGCCTGAACCTG 
CCGATGATCACCGCCCAGCGCTGA