ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5521

TrivialName: PA14_54850

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_54850

PAO1 Ortholog Locus:

Sequence Length: 222

Protein Length: 73

Start: 4860413

Stop: 4860634

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAN62223.1|AF440524_10 (AF440524) putative integrase [Pseudomonas aeruginosa] Identities = 43/67 (64%), Positives = 55/67 (82%)

Sequence:

TTGTGGATCATTCCGGCAAACATGGTCAAGCAGCTCAAGACCGATATGCGCCGCAAGCACCAACTACCAAAG
AACATCCCGCCATACATCTTGCCCCTGTCGGTGCAAGCCATCGAGATCGTTCGATACCTGTTGGAAGAGTTC
AAGCCGGCACAACGCTATCTGCTGCACGGTGACGTGGACATCAAGTCCCGCATCAGTGCCCCCTCAACAGTG
CGCTGA

Translation:

MWIIPANMVKQLKTDMRRKHQLPKNIPPYILPLSVQAIEIVRYLLEEFKPAQRYLLHGDVDIKSRISAPSTV
R*

AnnotationID:5523 GeneID:5521

AnnotatorUID: danlee

Modification Date/Time: 2005-10-03 14:02:03

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

weak similarity to middle portion of integrases found in various organisms.

Homology:

gi|33390905|gb|AAQ17120.1|  integrase [Pseudomonas putida]
     Length=631
     Score = 99.8 bits (247),  Expect = 2e-20
     Identities = 45/67 (67%), Positives = 58/67 (86%), Gaps = 0/67 (0%)

gi|47572271|ref|ZP_00242316.1|  COG0582: Integrase [Rubrivivax gelatinosus PM1]
     Length=567
     Score = 99.0 bits (245),  Expect = 4e-20
     Identities = 45/67 (67%), Positives = 58/67 (86%), Gaps = 0/67 (0%)

gi|56312879|emb|CAI07524.1|  phage-related integrase [Azoarcus sp. EbN1]
     Length=390
     Score = 94.0 bits (232),  Expect = 1e-18
     Identities = 42/66 (63%), Positives = 56/66 (84%), Gaps = 0/66 (0%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:15380

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28179