ViewGene
Locus Name:
GeneID:
Location:

GeneID:5520
TrivialName: PA14_54870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54870
PAO1 Ortholog Locus:
Sequence Length:909
Protein Length:302
Start: 4862516
Stop: 4861608
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAF23807.1|AF213822_22 (AF213822) regulator protein PchR [Zymomonas mobilis]
Identities = 74/255 (29%), Positives = 115/255 (45%), Gaps = 3/255 (1%)
Sequence:
ATGGAAGGTGCAGCACACGAATCGACAGCGTATTCCTCTCCCGCCGATGCCGACCATGGCATGGTCACACTG
CAGCCCGGCTTGATCGTCTGCCATACGGTTGCAACCAGCCTTGGCGCTGTCTCCACCACCAAGACGTTCGAC
GGTGACTGCGAGTTCATTCACCTCAACTGCCAACTGGCCGGAAAGTTCACCGGACGGGTCGGCAGCCATCCT
TTGGATTTTTCCCAAGGAGACGTCTCGCTTGGTTTTTCGGCTGGCGAACGGTTCCAAATCCAGCATTGCGAC
CGGTTTGAGAACCTGACGGTGATGGTCACGCCAGACGTGCTATGTGAGTTGGCGGGGGAAGAAGTGCGCCCC
ATGCTCGGCCCCGAAGGCAATCCTGGATTCTTCGTCCGGTATGCGGGACTCTGCCGAAAATCGATTCGTTCT
GCCAAAAGCGTTGCCAGCCTACTGGCCACGGCTCCGTGTCAGCGCCTCCTGCTTCACGCTGCAACCCTCGAC
TTCCTGCATTGGCATCTCGCCGCGTTCCGCAACTGCGAAGACTGCAGGCGACTCTCCGTGCGCGAATGTCGG
CAGCTGGAAAACGCCCGGGCACTGCTGCTGCAGGATCTCAGCACCCCTCCAACCATTGCCGAACTCGCGAAA
GCCGTCGGCATGAACCAATGCAAGCTAAAGAAGTGCTTCAAAGACCACTTCGGCAGCACCATCTACGCCTTG
TTTCAAGAGCAGCGGATGAGCAGCGCTCAGCAGCTGCTGCAGAGCTACAACGTGACCGAGACGGCAATGATG
CTTGGCTACTCCAACGTCAGCCACTTCAGCGCCGCCTTCGCCAAGCAGTTTGGTAACTTGCCGAGCAAGGCG
CGCCAGAGCGTCACAGTAGCTGTTCGGGGCTATCATCCCGTCTAA
Translation:
MEGAAHESTAYSSPADADHGMVTLQPGLIVCHTVATSLGAVSTTKTFDGDCEFIHLNCQLAGKFTGRVGSHP
LDFSQGDVSLGFSAGERFQIQHCDRFENLTVMVTPDVLCELAGEEVRPMLGPEGNPGFFVRYAGLCRKSIRS
AKSVASLLATAPCQRLLLHAATLDFLHWHLAAFRNCEDCRRLSVRECRQLENARALLLQDLSTPPTIAELAK
AVGMNQCKLKKCFKDHFGSTIYALFQEQRMSSAQQLLQSYNVTETAMMLGYSNVSHFSAAFAKQFGNLPSKA
RQSVTVAVRGYHPV*
AnnotationID:5522GeneID:5520
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 15:03:37
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48765326|ref|ZP_00269877.1|  COG2207: AraC-type DNA-binding domain-containing 
proteins [Rhodospirillum rubrum]
     Length=277
     Score =  198 bits (504),  Expect = 2e-49
     Identities = 117/277 (42%), Positives = 161/277 (58%), Gaps = 5/277 (1%)

gi|48763243|ref|ZP_00267799.1|  COG2207: AraC-type DNA-binding domain-containing 
proteins [Rhodospirillum rubrum]
     Length=292
     Score =  177 bits (450),  Expect = 3e-43
     Identities = 110/267 (41%), Positives = 153/267 (57%), Gaps = 3/267 (1%)








 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
    CD-Length = 127 residues,  86.6% aligned
    Score = 83.8 bits (206), Expect = 5e-17







   
Genomic Context:






   
Comment:


















    ReferenceID:11033




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16929




  
Author/Investigator(s):
        





  
Title:
        blastp search against nr database




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Blast (text/plain)







    
Data:5520blast.cgi


    		




 
URL:

















    ReferenceID:28177




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48522How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 91391Stop: 92299

          
Length: 909


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGAAGGTGCAGCACACGAATCGACAGCGTATTCCTCTCCCGCCGATGCCGACCATGGCATGGTCACACTG 
CAGCCCGGCTTGATCGTCTGCCATACGGTTGCAACCAGCCTTGGCGCTGTCTCCACCACCAAGACGTTCGAC 
GGTGACTGCGAGTTCATTCACCTCAACTGCCAACTGGCCGGAAAGTTCACCGGACGGGTCGGCAGCCATCCT 
TTGGATTTTTCCCAAGGAGACGTCTCGCTTGGTTTTTCGGCTGGCGAACGGTTCCAAATCCAGCATTGCGAC 
CGGTTTGAGAACCTGACGGTGATGGTCACGCCAGACGTGCTATGTGAGTTGGCGGGGGAAGAAGTGCGCCCC 
ATGCTCGGCCCCGAAGGCAATCCTGGATTCTTCGTCCGGTATGCGGGACTCTGCCGAAAATCGATTCGTTCT 
GCCAAAAGCGTTGCCAGCCTACTGGCCACGGCTCCGTGTCAGCGCCTCCTGCTTCACGCTGCAACCCTCGAC 
TTCCTGCATTGGCATCTCGCCGCGTTCCGCAACTGCGAAGACTGCAGGCGACTCTCCGTGCGCGAATGTCGG 
CAGCTGGAAAACGCCCGGGCACTGCTGCTGCAGGATCTCAGCACCCCTCCAACCATTGCCGAACTCGCGAAA 
GCCGTCGGCATGAACCAATGCAAGCTAAAGAAGTGCTTCAAAGACCACTTCGGCAGCACCATCTACGCCTTG 
TTTCAAGAGCAGCGGATGAGCAGCGCTCAGCAGCTGCTGCAGAGCTACAACGTGACCGAGACGGCAATGATG 
CTTGGCTACTCCAACGTCAGCCACTTCAGCGCCGCCTTCGCCAAGCAGTTTGGTAACTTGCCGAGCAAGGCG 
CGCCAGAGCGTCACAGTAGCTGTTCGGGGCTATCATCCCGTCTAA