ViewGene

Locus Name:
GeneID:
Location:

GeneID:552
TrivialName: PA14_31470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31470
PAO1 Ortholog Locus:PA2557
Sequence Length:1695
Protein Length:564
Start: 2735341
Stop: 2737035
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05945.1|AE004683_9 (AE004683) probable AMP-binding enzyme [Pseudomonas aeruginosa PAO1]
Identities = 561/564 (99%), Positives = 562/564 (99%)
Sequence:
ATGAATCAGCCGAGCTATACCTCGGGTCGCCAGGATGTCGCCTTGCTGGCGACCACCGTCGGCGACGCCTTC
GATGCCACCGTCGCGCATCATGCCGAGCGCGAGGCGCTGGTGGTGCGGCATCAACGCCTGCGCTACAGCTGG
CGGCAACTGGCGGAGCGGGTCGATACCTACGCCCGCGCCTTCATCGCCCTGGGCCTGCGCCCCGGCGAGCGC
CTGGGGATCTGGGCGCCGAACTGCGCCGAATGGTGCATTACCCAGTTCGCCAGCGCCAAGGTCGGTGCGGTC
CTGGTGAACATCAACCCGGCATACCGCAGCAGCGAGCTGGAATACGCTCTCAAGCAGTCCGGTTGCAGCTGG
CTGATCTGCGCCGACGCCTTCAAGACCAGCGACTACCACGCGATGCTCGGCGACCTGCTGCCGGAGCTGGCG
CGGGCGCGTCCGGGCGAACTGGCCAGCGAGCGCCTGCCGGAGCTGCGCGGCGTGATCAGCCTGGCCGAGCGG
GCGCCGGCGGGCTTCCTGCACTGGCAGGGCCTGCCGGGGCTGGCCGCCGCGGTAGGCGCCGAGGAACTGCGC
CAGCGCCAGGCCTCGCTGCAGTTCGACGAGCCGATCAACATCCAGTACACCTCCGGTACCACGGGCTTCCCC
AAGGGCGCCACCCTCAGCCACTACAACATCCTCAACAACGGCTACATGGTCGGCGAAAGCCTCGGACTCGGC
GCGGAAGACCGCCTGGTGATCCCGGTGCCGCTGTATCACTGCTTCGGCATGGTGATGGGCAACCTCGGCTGC
GTCACCCACGGCTCGACCATGATCTACCCGGCGCCCAGCTTCGACGCCGAGGCGACCCTGCTGGCCGTGGCC
GAGGAGCGCGCCACCGCGCTGTACGGGGTACCGACCATGTTCATCGCCGAGCTGGATCATCCGCGCCGCCGC
GAATTCGACCTTTCCAGCCTGCGCACCGGAATCATGGCCGGCGCCACCTGCCCGATCGAGGTGATGCGGCGG
GTCATTGGCGACATGCACATGGCCGAGGTGCAGATCGCCTACGGCATGACCGAGACCAGCCCGGTGTCGCTG
CAGACCGGTCCGGACGATGGCCTGGAGCTGCGCGTGACCACTGTCGGACGCACCCAGCCGAGGCTGGAGAGC
AAGATCGTCGACCAGACGGGCAGGGTGGTGCCGCGCGGCGAGATCGGCGAGCTGTGCACCCGCGGCTACAGC
GTGATGCTCGGCTACTGGAACGACCCCCAGGCCACCGCCGAGGCCATCGACCCGGCGCGCTGGATGCACACC
GGCGACCTGGCGGTGATGGACGACGACGGCTACGTGCGGATCGTCGGGCGCAGCAAGGACATGATCATCCGC
GGCGGCGAGAACATCTATCCGCGCGAACTGGAGGAGTTCTTCTTCACTCACCCGGCGGTGGCCGACGTGCAG
GTGATCGGCATCCCCGACGAGCGCTATGGCGAGGAAATCGTCGCCTGGATCAAGCTGCATCCGGGCCACCAC
GCCGATGACGAACAGTTGCGGGCGTTCTGCAAGGCGCGTATCGCTCACTTCAAGATCCCGCGCCACTTCAGG
TTCGTCGACGAGTTCCCGATGACCGTTACCGGCAAGATCCAGAAGTTCCGCATGCGCGAGATCAGCATCGAA
GAGATTCGCCTACTCGCGCTGCGCCAGGGGCGCGATTGA
Translation:
MNQPSYTSGRQDVALLATTVGDAFDATVAHHAEREALVVRHQRLRYSWRQLAERVDTYARAFIALGLRPGER
LGIWAPNCAEWCITQFASAKVGAVLVNINPAYRSSELEYALKQSGCSWLICADAFKTSDYHAMLGDLLPELA
RARPGELASERLPELRGVISLAERAPAGFLHWQGLPGLAAAVGAEELRQRQASLQFDEPINIQYTSGTTGFP
KGATLSHYNILNNGYMVGESLGLGAEDRLVIPVPLYHCFGMVMGNLGCVTHGSTMIYPAPSFDAEATLLAVA
EERATALYGVPTMFIAELDHPRRREFDLSSLRTGIMAGATCPIEVMRRVIGDMHMAEVQIAYGMTETSPVSL
QTGPDDGLELRVTTVGRTQPRLESKIVDQTGRVVPRGEIGELCTRGYSVMLGYWNDPQATAEAIDPARWMHT
GDLAVMDDDGYVRIVGRSKDMIIRGGENIYPRELEEFFFTHPAVADVQVIGIPDERYGEEIVAWIKLHPGHH
ADDEQLRAFCKARIAHFKIPRHFRFVDEFPMTVTGKIQKFRMREISIEEIRLLALRQGRD*
AnnotationID:561GeneID:552
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 06:06:57
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA synthetases (AMP-forming)
Cell Localization:()
Synonyms:PA2557
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0318,pfam00501,COG0365
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69060.1|AE016539_1 (AE016786) long-chain-fatty-acid-CoA ligase, putative [Pseudomonas
           putida KT2440]
          Length = 562

 Score =  894 bits (2309), Expect = 0.0
 Identities = 435/559 (77%), Positives = 481/559 (86%)

>gb|AAG09247.1|AF176639_1 (AF176639) long chain fatty acid-CoA ligase [Pseudomonas stutzeri]
          Length = 567

 Score =  858 bits (2216), Expect = 0.0
 Identities = 417/554 (75%), Positives = 465/554 (83%)

>dbj|BAB53123.1| (AP003010) long chain fatty acid acyl-CoA ligase [Mesorhizobium
           loti]
          Length = 590

 Score =  629 bits (1623), Expect = e-179
 Identities = 309/554 (55%), Positives = 396/554 (71%)

Structural Features:
COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 534 residues,  99.6% aligned
Score =  453 bits (1166), Expect = 3e-128
Identities = 210/556 (37%), Positives = 293/556 (52%), Gaps = 30/556 (5%)

pfam00501, AMP-binding, AMP-binding enzyme.
CD-Length = 412 residues, 100.0% aligned
Score =  328 bits (842), Expect = 9e-91
Identities = 147/438 (33%), Positives = 202/438 (46%), Gaps = 29/438 (6%)

COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
CD-Length = 528 residues,  95.1% aligned
Score =  259 bits (664), Expect = 6e-70
Identities = 146/536 (27%), Positives = 215/536 (40%), Gaps = 46/536 (8%)
Genomic Context:
Comment:
ReferenceID:1107
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18249
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33134
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:552_cdd.html
URL:
Homologs By Global Alignment
Gene ID:552

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
954 PA2557_tr translation of PA2557 564 99.46 99.64 0 2938.0
38199 gb|AAG05945.1|AE004683_9 (AE004683) probable AMP-binding enzyme [Pseudomonas aeruginosa PAO1] 564 99.46 99.64 0 2938.0
38200 gb|AAN69060.1|AE016539_1 (AE016786) long-chain-fatty-acid-CoA ligase, putative [Pseudomonas putida KT2440] 564 77.12 85.46 2 2304.0
38201 gb|AAN69653.1|AE016600_3 (AE016789) long-chain-fatty-acid-CoA ligase, putative [Pseudomonas putida KT2440] 564 76.95 84.75 4 2292.0
38202 gb|AAG09247.1|AF176639_1 (AF176639) long chain fatty acid-CoA ligase [Pseudomonas stutzeri] 572 73.60 82.16 13 2214.0
GC ORFID: 43554How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2557Glimmer Score:
Start: 2218585Stop: 2216891
Length: 1695
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2557 translation of PA2557Homolog Bit Score 1136.0
Other Homologs: t_PA2557 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCAGCCGAGCTATACCTCGGGTCGCCAGGATGTCGCCTTGCTGGCGACCACCGTCGGCGACGCCTTC
GATGCCACCGTCGCGCATCATGCCGAGCGCGAGGCGCTGGTGGTGCGGCATCAACGCCTGCGCTACAGCTGG
CGGCAACTGGCGGAGCGGGTCGATACCTACGCCCGCGCCTTCATCGCCCTGGGCCTGCGCCCCGGCGAGCGC
CTGGGGATCTGGGCGCCGAACTGCGCCGAATGGTGCATTACCCAGTTCGCCAGCGCCAAGGTCGGTGCGGTC
CTGGTGAACATCAACCCGGCATACCGCAGCAGCGAGCTGGAATACGCTCTCAAGCAGTCCGGTTGCAGCTGG
CTGATCTGCGCCGACGCCTTCAAGACCAGCGACTACCACGCGATGCTCGGCGACCTGCTGCCGGAGCTGGCG
CGGGCGCGTCCGGGCGAACTGGCCAGCGAGCGCCTGCCGGAGCTGCGCGGCGTGATCAGCCTGGCCGAGCGG
GCGCCGGCGGGCTTCCTGCACTGGCAGGGCCTGCCGGGGCTGGCCGCCGCGGTAGGCGCCGAGGAACTGCGC
CAGCGCCAGGCCTCGCTGCAGTTCGACGAGCCGATCAACATCCAGTACACCTCCGGTACCACGGGCTTCCCC
AAGGGCGCCACCCTCAGCCACTACAACATCCTCAACAACGGCTACATGGTCGGCGAAAGCCTCGGACTCGGC
GCGGAAGACCGCCTGGTGATCCCGGTGCCGCTGTATCACTGCTTCGGCATGGTGATGGGCAACCTCGGCTGC
GTCACCCACGGCTCGACCATGATCTACCCGGCGCCCAGCTTCGACGCCGAGGCGACCCTGCTGGCCGTGGCC
GAGGAGCGCGCCACCGCGCTGTACGGGGTACCGACCATGTTCATCGCCGAGCTGGATCATCCGCGCCGCCGC
GAATTCGACCTTTCCAGCCTGCGCACCGGAATCATGGCCGGCGCCACCTGCCCGATCGAGGTGATGCGGCGG
GTCATTGGCGACATGCACATGGCCGAGGTGCAGATCGCCTACGGCATGACCGAGACCAGCCCGGTGTCGCTG
CAGACCGGTCCGGACGATGGCCTGGAGCTGCGCGTGACCACTGTCGGACGCACCCAGCCGAGGCTGGAGAGC
AAGATCGTCGACCAGACGGGCAGGGTGGTGCCGCGCGGCGAGATCGGCGAGCTGTGCACCCGCGGCTACAGC
GTGATGCTCGGCTACTGGAACGACCCCCAGGCCACCGCCGAGGCCATCGACCCGGCGCGCTGGATGCACACC
GGCGACCTGGCGGTGATGGACGACGACGGCTACGTGCGGATCGTCGGGCGCAGCAAGGACATGATCATCCGC
GGCGGCGAGAACATCTATCCGCGCGAACTGGAGGAGTTCTTCTTCACTCACCCGGCGGTGGCCGACGTGCAG
GTGATCGGCATCCCCGACGAGCGCTATGGCGAGGAAATCGTCGCCTGGATCAAGCTGCATCCGGGCCACCAC
GCCGATGACGAACAGTTGCGGGCGTTCTGCAAGGCGCGTATCGCTCACTTCAAGATCCCGCGCCACTTCAGG
TTCGTCGACGAGTTCCCGATGACCGTTACCGGCAAGATCCAGAAGTTCCGCATGCGCGAGATCAGCATCGAA
GAGATTCGCCTACTCGCGCTGCGCCAGGGGCGCGATTGA