ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5519

TrivialName: PA14_54890

AnnotatorUID: danlee

Modification Date/Time: 2006-04-13 15:03:13

LocusName: PA14_54890

PAO1 Ortholog Locus:

Sequence Length: 1905

Protein Length: 634

Start: 4865318

Stop: 4863414

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAB73095.1| (AP003584) ORF_ID:alr1138~hypothetical protein [Nostoc sp. PCC 7120] Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Sequence:

ATGAACTCGGTGAAGAAAATTATTGTGCTGGGCGGCCATGGCGAAACAGGAAGACGCATCGTCGGCAATCTG
TCACTGCGCTATCCAGACCTGCAGGTCACCATCGGCTCGCGGCGAGCGGCTCCCGCCTCGGACGGGACCACG
CCGATTGTCCGGATCGATACCAATGACCGAGTACAAGCCCTGGAGGTGCTGTCGCACTACGACCTGGCAATC
ATCGCCCTGGGACCTATGCATGTGCATGGAAGTACACCGCATCAGCTATGCATCGAGGCAGGGGTCGATTGC
ATCGACATCAATGATAGCCTGGTTGTCGCAGAGCAAGTCCTGGCTCTGCAGGCTGTCGCGGCGCAGAGCAAG
CGGGCGGTTTTCACCGGCATGGGGTTTACCCCGGGGCTGTCCAGCATGTTGATCGCAGAACTGGCCGACCAG
CATGCCTCCCATACCGGGACCTACCGGATTCGCGCATGCATGGGGGCTGCGTACGGTGGCGGGGAAACAAGT
CCCTACGCCATTCTCTCCAGTTTCCGCCCGCAAATCGCCACCCTCGTTGCCGGCGCTCATCAAAGCGTTCCC
ACCCCTTGGAGGGATGGCCTCGAGCGCTTCTCATTCCCGGGGCAGCAAGTCCCCGTCGAAACCATTCCGTTT
TCGCCGCTGGAGGCCGTCAGCCTCGCCTCGTCCCGCAGCGCCCTAGCCGGCGTCGTATCGAATCTGGATGCG
CGCTATCACATCCAATATCTAAAACAGGGGTTCGCACGGATGCTGGCCCGCATCCAACTGTCGCCGCAGACC
GTTGAGTGGTTCGCCAGGAAATTCTACAAAAGCGGCCAGAAGATGAAGCGCAAGAAGGATGCAGATCCCGAT
ACCGTGCTGTGGGTGTATCCGGACGACGCTCCGCAGCGCGGACTGCTGGTACATGGTGTGCTGTCGTCCTAC
GACTTGACCGCCGCGATGGCCTGCGCCGTCGCCGATGCCTGGCTGGCGGGTGATCTTGCGGCATGCCAAGGC
GTCTATGCCGTCGACCATCTGGGTGAAGACTTGCGAGCTTGCCTGCGCCGGCATCTGGCACGCCGAGGTGTC
ACCAGCAAGCCTGCGGACATCCCCGGCCTGACCGAGCAGGGGCTGGACTTTGGCTGGGTCGCCAGCATCAGC
AGCAGCGACGTGCGAGCGCTTCGCCACTTCCGCTGCAACTGGTACACGGCCAGCCCCAAGCACCCCAAGATG
GTCCCGCTGCAAAAGCGCTTTCTGCTGCAATCCAAGGTCTGGAAGACTTTGCGGAGTAGACGAAAGGGACTG
TCATTTCTCGGATTCGTCCTGTTCACCATGCGTCGGTGGCGGCAGCACTTTAAGGCGTTGAAGTCGTTCAGG
TCAGAAGCCGTCGGCCCGTGCGCCGGATGGTGGCCAGATATCACGCGTGACATCAGCATGTTCACGTCCGGC
TACTCCCGGGTGCGAGACATGCTTGGACAAACACTGGCATTGCAGCTGTACGGTCAGATGTTCCTGGAAACG
GGACGGATGGAAATGCGATGGCTGTGGCCGGATCCGACCATCTTCGCGGCGCTGGATCGGCCCGCCGAGGGT
GTGCGTGACTACTGGCTGGCATTCATGGAGGGCTGCCAGGAATTGGGAGTGCTTCGCTATGAGACCCAGACC
GAAGGGAACCGTCTGGTTTGCGAAATCACCCACTGCGCATACGCCGCTATGTTCGCCCGACTCGATTGCCCG
GAACTTGCGGCGCTTGTGCGGCAGATGGAGCATGAAGCACTCGCCTACATGGCGAGCAACAGCGGATTGGAG
CTGGACTGGCAGGCAGGACCATCAGGAACCGCCAGAATCATGCTGAAAACCCCGTTATCGTCCGACCGGCAG
CCTGCCGAACAGCAGCAAAGGGTATCTGTATGA

Translation:

MNSVKKIIVLGGHGETGRRIVGNLSLRYPDLQVTIGSRRAAPASDGTTPIVRIDTNDRVQALEVLSHYDLAI
IALGPMHVHGSTPHQLCIEAGVDCIDINDSLVVAEQVLALQAVAAQSKRAVFTGMGFTPGLSSMLIAELADQ
HASHTGTYRIRACMGAAYGGGETSPYAILSSFRPQIATLVAGAHQSVPTPWRDGLERFSFPGQQVPVETIPF
SPLEAVSLASSRSALAGVVSNLDARYHIQYLKQGFARMLARIQLSPQTVEWFARKFYKSGQKMKRKKDADPD
TVLWVYPDDAPQRGLLVHGVLSSYDLTAAMACAVADAWLAGDLAACQGVYAVDHLGEDLRACLRRHLARRGV
TSKPADIPGLTEQGLDFGWVASISSSDVRALRHFRCNWYTASPKHPKMVPLQKRFLLQSKVWKTLRSRRKGL
SFLGFVLFTMRRWRQHFKALKSFRSEAVGPCAGWWPDITRDISMFTSGYSRVRDMLGQTLALQLYGQMFLET
GRMEMRWLWPDPTIFAALDRPAEGVRDYWLAFMEGCQELGVLRYETQTEGNRLVCEITHCAYAAMFARLDCP
ELAALVRQMEHEALAYMASNSGLELDWQAGPSGTARIMLKTPLSSDRQPAEQQQRVSV*

AnnotationID:5521 GeneID:5519

AnnotatorUID: danlee

Modification Date/Time: 2005-10-03 15:03:56

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid 
transport and metabolism].
             CD-Length = 389 residues, only  44.2% aligned
             Score = 71.1 bits (174), Expect = 3e-13

pfam03435, Saccharop_dh, Saccharopine dehydrogenase.
             CD-Length = 391 residues, only  45.3% aligned
             Score = 49.9 bits (119), Expect = 9e-07

Genomic Context:

Comment:

N-terminus of this gene and N-terminus of upstream GeneID 5518 have weak similarity
to  Saccharopine dehydrogenase consered domain (COG1748, pfam03435).

ReferenceID:11031

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28175