ViewGene
Locus Name:
GeneID:
Location:

GeneID:5518
TrivialName: PA14_54900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54900
PAO1 Ortholog Locus:
Sequence Length:1155
Protein Length:384
Start: 4866469
Stop: 4865315
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAC17501.1| (AL939132) conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Identities = 101/366 (27%), Positives = 140/366 (38%), Gaps = 32/366 (8%)
Sequence:
ATGGATACTCAGAGCAGCGGAGCCCGGATCTTGATCTTGGGTGGCTATGGACGCGTCGGGCAAGAAGCTGCC
CGCTATCTTCTGAACGCGACCGATGCGAAGGTTGCCCTGTCGAGTCGAATGGCCCGGCCGCTGCCCGTATGG
GCCGGGCCCGGTTCGCTGGATCGCTTAACGAACCAACAACTTGATGTGTTCGATGGCGAAGCGTTGGTCGCG
GCATGTGCACGGTCAGACCTGGTCATCTCGTGCGCAGGACCGTCGGGATTGATCGGCGAACGCGTGGCCATG
GCCTGCAAGCGGGCGGGCGTTCCGCTCGTGGAGGCGGGCGGGTACGATCCGCTGTTGCACAGCTTGCAACAG
GCTCAGGCCTCAGCGCCGACGTCGGTTCCGCTTGTCATCAACGTGGGATTGCTTCCTGGCTTGTCCGGGCTG
TTCCCGAAGTGGCTTCTGGACACCCGGCGCGACACTCAACTTGTCGAGGCGCTCGACGTCTACTACGTCGGG
CGCGACGCATGGACCTACAACTCGGCCTGGGACATCATCAACAGCCTCGGTGGCTTTGGCCATGACCGGGGC
TTCTGCTATTTGAACGGACAGAATGTCGTTCGGGTTCCCATGCGTAAGGCCGCGCGCAAGGTCAACTTCCCC
GACCCGATTGGCAGCGCCTCGACCATGCTCATCTATTCAGAAGAGATCGCCCGGCTGGCCTGCCAATGGGAA
ATAGATACTGCGCGCGTCTACGGAGCCAACATTGGCCCTCGCGCGACCCTGGTGTGCATGCTGGCGAAGGTT
TTGCGCTTTTATCAAACGCCACGGGCGGTGGCGCGGGGCGCTCGCTGGCTGGCCCGCGCGTCTGCCCGCGAC
ATGCAAAAGCTTGAGCCCGCCTACGGAATCCATGTCGACCTGCACTACCGCGGCGGGCGCACGGCGAGCGCC
ACGTTAACCCTGGACGACACCTATCGGGCGACCGGAACAGTGATCGGCATCGCTGCGCATCAACTCCTCGAT
GAAGAGGGGCCAGGCCCCGGCATATTCATGTTGCACGAGGCCGTCCAATCCGAACGCTTCATGCATTCCCTG
GAGGCCCAGGGACTTTTGCGGATTTTTCACGGGGCACAGGACTCCGGCAACAGGCTGGAGGGAGCGACGGTA
TGA
Translation:
MDTQSSGARILILGGYGRVGQEAARYLLNATDAKVALSSRMARPLPVWAGPGSLDRLTNQQLDVFDGEALVA
ACARSDLVISCAGPSGLIGERVAMACKRAGVPLVEAGGYDPLLHSLQQAQASAPTSVPLVINVGLLPGLSGL
FPKWLLDTRRDTQLVEALDVYYVGRDAWTYNSAWDIINSLGGFGHDRGFCYLNGQNVVRVPMRKAARKVNFP
DPIGSASTMLIYSEEIARLACQWEIDTARVYGANIGPRATLVCMLAKVLRFYQTPRAVARGARWLARASARD
MQKLEPAYGIHVDLHYRGGRTASATLTLDDTYRATGTVIGIAAHQLLDEEGPGPGIFMLHEAVQSERFMHSL
EAQGLLRIFHGAQDSGNRLEGATV*
AnnotationID:5520GeneID:5518
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 15:03:20
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
weak similarity to hypothetical unknowns in other organisms.






 
Structural Features:
COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid 
transport and metabolism].
             CD-Length = 389 residues, only  57.1% aligned
             Score = 75.3 bits (185), Expect = 1e-14

pfam03435, Saccharop_dh, Saccharopine dehydrogenase.
             CD-Length = 391 residues, only  61.1% aligned
             Score = 66.8 bits (163), Expect = 4e-12






   
Genomic Context:






   
Comment:
N-terminus of this gene and N-terminus of downstream GeneID 5519 have weak similarity
to  Saccharopine dehydrogenase consered domain (COG1748, pfam03435).


















    ReferenceID:11029




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28173




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48520How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 87438Stop: 88592

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGATACTCAGAGCAGCGGAGCCCGGATCTTGATCTTGGGTGGCTATGGACGCGTCGGGCAAGAAGCTGCC 
CGCTATCTTCTGAACGCGACCGATGCGAAGGTTGCCCTGTCGAGTCGAATGGCCCGGCCGCTGCCCGTATGG 
GCCGGGCCCGGTTCGCTGGATCGCTTAACGAACCAACAACTTGATGTGTTCGATGGCGAAGCGTTGGTCGCG 
GCATGTGCACGGTCAGACCTGGTCATCTCGTGCGCAGGACCGTCGGGATTGATCGGCGAACGCGTGGCCATG 
GCCTGCAAGCGGGCGGGCGTTCCGCTCGTGGAGGCGGGCGGGTACGATCCGCTGTTGCACAGCTTGCAACAG 
GCTCAGGCCTCAGCGCCGACGTCGGTTCCGCTTGTCATCAACGTGGGATTGCTTCCTGGCTTGTCCGGGCTG 
TTCCCGAAGTGGCTTCTGGACACCCGGCGCGACACTCAACTTGTCGAGGCGCTCGACGTCTACTACGTCGGG 
CGCGACGCATGGACCTACAACTCGGCCTGGGACATCATCAACAGCCTCGGTGGCTTTGGCCATGACCGGGGC 
TTCTGCTATTTGAACGGACAGAATGTCGTTCGGGTTCCCATGCGTAAGGCCGCGCGCAAGGTCAACTTCCCC 
GACCCGATTGGCAGCGCCTCGACCATGCTCATCTATTCAGAAGAGATCGCCCGGCTGGCCTGCCAATGGGAA 
ATAGATACTGCGCGCGTCTACGGAGCCAACATTGGCCCTCGCGCGACCCTGGTGTGCATGCTGGCGAAGGTT 
TTGCGCTTTTATCAAACGCCACGGGCGGTGGCGCGGGGCGCTCGCTGGCTGGCCCGCGCGTCTGCCCGCGAC 
ATGCAAAAGCTTGAGCCCGCCTACGGAATCCATGTCGACCTGCACTACCGCGGCGGGCGCACGGCGAGCGCC 
ACGTTAACCCTGGACGACACCTATCGGGCGACCGGAACAGTGATCGGCATCGCTGCGCATCAACTCCTCGAT 
GAAGAGGGGCCAGGCCCCGGCATATTCATGTTGCACGAGGCCGTCCAATCCGAACGCTTCATGCATTCCCTG 
GAGGCCCAGGGACTTTTGCGGATTTTTCACGGGGCACAGGACTCCGGCAACAGGCTGGAGGGAGCGACGGTA 
TGA