ViewGene

Locus Name:
GeneID:
Location:

GeneID:5516
TrivialName: PA14_54930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54930
PAO1 Ortholog Locus:
Sequence Length:3342
Protein Length:1113
Start: 4875437
Stop: 4872096
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAC17499.1| (AL939132) putative non-ribosomal peptide synthase [Streptomyces coelicolor A3(2)]
Identities = 480/1117 (42%), Positives = 630/1117 (56%), Gaps = 47/1117 (4%)
Sequence:
ATGCGTCTCGTCAACGACTGGCGGCGGGAGGGCATTGCGCTGACGTTTGCCCAACTTATCGAGCGGCCCTAT
CTCAAGCATTGGCTCCAACTGCTGGAGACGGTCCGGCCCAATGCCCCGACAGAGACGGCAGCGTGGCAGCCC
GATAGCCTGGAGGCATCAACGCCAATCGACGGTGCAGAAGCCTTTGGGCTGACTGACGTGCAGTATGCGTAT
TGGGTGGGCCGTCAGGATGGCCAGCCTCTCGGAGGCGTGGGATGCCATGCTTATCTGGAGCTCGAAGGTCGT
GGTATCGACCCGTCCAGGCTGGAGGGTGGATGGCAGCAGCTTTTCCGACAGCACGCCATGCTCCGAACCCGG
TTTGGCACGGATGGTACGCAGTGTGTCTGCGAGGATCTGGCCGCACCTCCGTTGCGCACGCATGATTTCAGG
CATCTCGCTGCAAATGAAGCTGAAGCCAGGTTGCTGGCTGTTCGGGATCGCCTCTCACATCGTCGCTTGGAT
GTGGCAATCGGAGAAGTTGCGGGCCTGGAGCTCTCACTGCTTCCCGGTGGCGGCACCTGCATCCACTTCGAC
ATCGATTTGCTCGTGGCGGATGTCCAGAGCCTGCACATACTGCTTCGCGATCTGGCAGCGGCTTATCAGGGG
CAAGCGCTTCGCGCTGATCCCGACTGGAGATTTTCCCAATATCTGAACAGCGAGGCTCGGCGGGGCGCCGAG
CAGGTAGATATTGCGCAGAAGTACTGGCAGGACAGCCTGGCCAAACTGCCTCCTGGCCCTCAGTTGCCCCTG
GTCAAGACGCCGGAGAATGTTGTACGGCCACGTTTCGTGCGCCGGCGGCATCAACTCCCCAGCGAGACTTGG
CAGACCTTGAGAAGACTGGCAGCGAGGAATGGCGTTACGCCAGCGATGATGCTGCTCTCTGCCTATGCGGAG
GTCTTGGGCAGGTGGAGCCAAGAGCCCGAGTTTTCGTTGAATCTTCCGCTGTTCGACCGCAGGACTGACCAC
CCAGGAGTCGAGCATGTCGTGGCTGACTTCACCAACCTGCTGCTACTGCGCTGCGACTGCCGCCATGCAGCG
TCGTTTTCTGACCGCACGCACGAACTCCAGCGGCAATTTCACCGTGACGTCGCCCACTCTTCCTATTCGGCA
GTCAACGTACAACGCGACATGGTTAAGCATGGCTTCGCCGAAGGAGTCATGGCTCCGGTGGTGTTTGCCTGC
AATCTCGGGACCCCGTTGCTGACGCCGGAGTGCAAGACCACGCTTGGCCGCCTTCGCTACATGGTGTCCCAG
ACACCGCAGGTCTGGCTGGATCACCAGGTCTATGAGGACGAGGAGGGGCTCTTATTGGCGTGGGACGCAGTG
GAGGAGCTGTTCCCCGAAGGGGTGGTCGACGACATGTTCTCCGCCTACTGCAACTTGTTGGAATGGCTGGCT
CAGGATGCGACTCATTGGCAACAGCTTATGCCATGGGTGCGGCGCAGCCACGAGCAGGACATCCGCACGGCC
GCTGTCGTGGACAACGGCATTGTGACCGATGCCTCGCTGCACCAGCGTATGTTCAATGTGGCCGCCACTATG
CCGGACCGCGTTGCTGTCGTTCTTGATGGTGGCGTCCTTTCCTATGGCGAGCTGGCGCGGCGCGCACTGCAA
GTGGCCGCGCTCTTGCATCGGCACGGTATCGAACCTGGTGAGCCAGTCGCCATCAGCCTGCCACGGGGCTTG
GACCAAGTGACAGCGGTATTCGGTGTTCTAGCCGCAGGTGCCTGCTACGTGCCCGTGGGAATGAGCCAGCCT
GCGGCCCGGCAGGCCAGGATCCATGAGACAGCTGGCATCCGTTGGGTCCTGACGGACTCCAGCGGTGTCGTC
ATGGCAACTCGTGAAGGTACCACCAGGCTGGACGTGGCCAGCGCTTGGCATATCGATCCTCCGTCAGAGTAC
CAGCCCGTCCGTGCGGACAGCAGCGCCTACATCATCTTTACCTCCGGCTCGACTGGCGAGCCCAAGGGCGTG
GAGGTAACCCACGCGGCAGCTGCCAACACCATCGATGTCCTCAACGCCCGCTATGGCGTGGGCCCCGACAGC
CGCGTGCTGGCCGTGTCCTCACTGGATTTCGACCTGTCGGTGTACGACCTCTTTGGCGTGCTCGGCGTCGGT
GGCGCGGTGGTGCTGCTCGACGAGGACCATCGCCGTGACGCCGCCGCTTGGCTGGAGCTCATCCACCAGCAC
CGGGTCACCCTGTGGAACTCCGTGCCGGTGCTGCTGGACATGCTGCTGGTGATGGCCGCCGAGGACCCTCGT
CCGCTGCCGTTCGAGCAGGTGTTCCTGTCCGGCGACTGGATAGGTCTGGACCTGCCCGGGCGGCTGTTCGCC
AAGACCTCCGGCAGCACGAAGCTGGTCGCCATGGGCGGCGCCACCGAGGCGGCCATCTGGTCGAACGCCTTC
GACGTGACCTTGCCGCTGCCGGCCCACTGGCGGTCCATCCCCTACGGCAGACCACTGGCCAACCAACGCTAC
CGGGTGGTCGACGCCCAGGGCCGGGACTGTCCGGACTGGGTGACCGGCGAGCTGTGGATCGGCGGTGCGGGT
GTCGCGCTCGGCTACCGGGGAGACCCGGCGCAGACCGCCGAGCGCTTCGTCGACTACAACGGCGAGCGCTGG
TACCGCACCGGCGACCTGGGGCGTTACTGGCCTGACGGCAACCTGGAGTTCCTCGGTCGGCGCGACCACCAG
GTCAAGGTGCGAGGCCACCGCATCGAACTGGGCGAGATCGAGGCGGCGCTGTCCGCCCTGCCCGGCGTGGCC
CGTGCGGTGGCGGTGACCATCGGCAAGCCGGTGGCTCTGGCCGCCGCTTTCGTGCCCACCGACCCCACGACA
CAGCCTCGTACCGACGAGTTGCTGGCCGCCCTGCGGCAACTGCTGCCCGACTACATGGTGCCGACTCACTTG
CAGGCCATCGATACCTTGCCCCTGAGCGGCAATGGCAAGGTCGATCGACAGGCCCTCGTGGCGCTGCTGGCT
ACCCAAGCCTCGACACGAGCGGCCTACGACCCGCCACAACCAGGTCTGGAGTGCGAGGTGGCCGATATCTGG
AGGGAGGTGCTGCAGTGCACCCCCCTTTCCAGAACGGACGACTTCTTCCTGATCGGCGGCGATAGCCTGCGA
GCTACGCAGATCGTGCAGTTGCTCCACTCGCGGCGGATCTCACCAGCACCCGTGCCGCTGTTTGTCCTGTTT
TCCAGCCCCACCATCGCCGCGCTCGCCCATCACATACGAGGACAGTGGCAGGCCCTGAGCATGACCGGAGCC
GAAGACTCCATTGAGGAAGGCATCCTATGA
Translation:
MRLVNDWRREGIALTFAQLIERPYLKHWLQLLETVRPNAPTETAAWQPDSLEASTPIDGAEAFGLTDVQYAY
WVGRQDGQPLGGVGCHAYLELEGRGIDPSRLEGGWQQLFRQHAMLRTRFGTDGTQCVCEDLAAPPLRTHDFR
HLAANEAEARLLAVRDRLSHRRLDVAIGEVAGLELSLLPGGGTCIHFDIDLLVADVQSLHILLRDLAAAYQG
QALRADPDWRFSQYLNSEARRGAEQVDIAQKYWQDSLAKLPPGPQLPLVKTPENVVRPRFVRRRHQLPSETW
QTLRRLAARNGVTPAMMLLSAYAEVLGRWSQEPEFSLNLPLFDRRTDHPGVEHVVADFTNLLLLRCDCRHAA
SFSDRTHELQRQFHRDVAHSSYSAVNVQRDMVKHGFAEGVMAPVVFACNLGTPLLTPECKTTLGRLRYMVSQ
TPQVWLDHQVYEDEEGLLLAWDAVEELFPEGVVDDMFSAYCNLLEWLAQDATHWQQLMPWVRRSHEQDIRTA
AVVDNGIVTDASLHQRMFNVAATMPDRVAVVLDGGVLSYGELARRALQVAALLHRHGIEPGEPVAISLPRGL
DQVTAVFGVLAAGACYVPVGMSQPAARQARIHETAGIRWVLTDSSGVVMATREGTTRLDVASAWHIDPPSEY
QPVRADSSAYIIFTSGSTGEPKGVEVTHAAAANTIDVLNARYGVGPDSRVLAVSSLDFDLSVYDLFGVLGVG
GAVVLLDEDHRRDAAAWLELIHQHRVTLWNSVPVLLDMLLVMAAEDPRPLPFEQVFLSGDWIGLDLPGRLFA
KTSGSTKLVAMGGATEAAIWSNAFDVTLPLPAHWRSIPYGRPLANQRYRVVDAQGRDCPDWVTGELWIGGAG
VALGYRGDPAQTAERFVDYNGERWYRTGDLGRYWPDGNLEFLGRRDHQVKVRGHRIELGEIEAALSALPGVA
RAVAVTIGKPVALAAAFVPTDPTTQPRTDELLAALRQLLPDYMVPTHLQAIDTLPLSGNGKVDRQALVALLA
TQASTRAAYDPPQPGLECEVADIWREVLQCTPLSRTDDFFLIGGDSLRATQIVQLLHSRRISPAPVPLFVLF
SSPTIAALAHHIRGQWQALSMTGAEDSIEEGIL*
AnnotationID:5518GeneID:5516
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 15:03:25
Gene Name:
Confidence Code:3
GeneProduct:putative non-ribosomal peptide synthetase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1020, pfam00501, COG0318
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68345154|gb|AAY92760.1|  pyochelin synthetase E [Pseudomonas fluorescens Pf-5]
     Length=1156
     Score =  927 bits (2397),  Expect = 0.0
     Identities = 518/1070 (48%), Positives = 667/1070 (62%), Gaps = 24/1070 (2%)

gi|68170848|gb|EAM98730.1|  Amino acid adenylation [Desulfitobacterium hafniense DCB-2]
     Length=1193
     Score =  821 bits (2120),  Expect = 0.0
     Identities = 475/1149 (41%), Positives = 666/1149 (57%), Gaps = 68/1149 (5%)

gi|68202782|gb|EAN16961.1|  Amino acid adenylation [Frankia sp. EAN1pec]
     Length=1678
     Score =  821 bits (2120),  Expect = 0.0
     Identities = 511/1159 (44%), Positives = 647/1159 (55%), Gaps = 88/1159 (7%)

gi|54014243|dbj|BAD55613.1|  putative non-ribosomal peptide synthetase [Nocardia farcinica IFM 10152]
     Length=1167
     Score =  798 bits (2060),  Expect = 0.0
     Identities = 456/1100 (41%), Positives = 626/1100 (56%), Gaps = 30/1100 (2%)

gi|21225942|ref|NP_631721.1|  putative non-ribosomal peptide synthase [Streptomyces coelicolor A3(2)]
     Length=2229
     Score =  791 bits (2042),  Expect = 0.0
     Identities = 480/1117 (42%), Positives = 630/1117 (56%), Gaps = 47/1117 (4%)

gi|71557019|gb|AAZ36230.1|  yersiniabactin non-ribosomal peptide synthetase [Pseudomonas 
syringae pv. phaseolicola 1448A]
     Length=2051
     Score =  763 bits (1971),  Expect = 0.0
     Identities = 434/970 (44%), Positives = 568/970 (58%), Gaps = 38/970 
Structural Features:
COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary 
metabolites biosynthesis, transport, and catabolism].
             CD-Length = 642 residues, 100.0% aligned
             Score =  419 bits (1077), Expect = 1e-117

pfam00501, AMP-binding, AMP-binding enzyme..
             CD-Length = 412 residues, 100.0% aligned
             Score =  287 bits (736), Expect = 4e-78

COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
             CD-Length = 534 residues,  96.4% aligned
             Score =  237 bits (605), Expect = 7e-63
Genomic Context:
Comment:
This gene and downstream gene (GeneID 5517) are putative non-ribosomal peptide synthetases with homologies 
to conserved domains COG1020, pfam00501, and COG0318.
ReferenceID:11025
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28169
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5516

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
197161 gb|AAD55800.1|AF184621_1 (AF184621) pyochelin synthetase PchE [Pseudomonas aeruginosa] 1480 34.86 44.18 409 2039.0
7890 PA4226_tr translation of PA4226 1476 34.75 43.97 401 2037.0
197162 gb|AAG07614.1|AE004839_7 (AE004839) dihydroaeruginoic acid synthetase [Pseudomonas aeruginosa PAO1] 1476 34.75 43.97 401 2037.0
197163 gb|AAC83656.1| (AF074705) dihydroaeruginoic acid synthetase; peptide synthetase [Pseudomonas aeruginosa] 1476 34.75 43.97 401 2037.0
197165 gb|AAN80883.1|AE016762_136 (AE016762) Putative peptide synthetase [Escherichia coli CFT073] 1471 32.49 42.55 407 1948.0
GC ORFID: 48518How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 78470Stop: 81811
Length: 3342
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4226 translation of PA4226Homolog Bit Score 754.0
Other Homologs: t_PA4226 translation of PA4226 (BLASTP 754), psyr_15may02_Scaffold1_revised_gene1359 related to: gi|12620806|gb|AAG61082.1|AF322013_201 (AF322013) ID930 [Bradyrhizobium japonicum] (BLASTP 197), t_PA2400 translation of PA2400 (BLASTP 146)
GC ORF Sequence
ATGCGTCTCGTCAACGACTGGCGGCGGGAGGGCATTGCGCTGACGTTTGCCCAACTTATCGAGCGGCCCTAT
CTCAAGCATTGGCTCCAACTGCTGGAGACGGTCCGGCCCAATGCCCCGACAGAGACGGCAGCGTGGCAGCCC
GATAGCCTGGAGGCATCAACGCCAATCGACGGTGCAGAAGCCTTTGGGCTGACTGACGTGCAGTATGCGTAT
TGGGTGGGCCGTCAGGATGGCCAGCCTCTCGGAGGCGTGGGATGCCATGCTTATCTGGAGCTCGAAGGTCGT
GGTATCGACCCGTCCAGGCTGGAGGGTGGATGGCAGCAGCTTTTCCGACAGCACGCCATGCTCCGAACCCGG
TTTGGCACGGATGGTACGCAGTGTGTCTGCGAGGATCTGGCCGCACCTCCGTTGCGCACGCATGATTTCAGG
CATCTCGCTGCAAATGAAGCTGAAGCCAGGTTGCTGGCTGTTCGGGATCGCCTCTCACATCGTCGCTTGGAT
GTGGCAATCGGAGAAGTTGCGGGCCTGGAGCTCTCACTGCTTCCCGGTGGCGGCACCTGCATCCACTTCGAC
ATCGATTTGCTCGTGGCGGATGTCCAGAGCCTGCACATACTGCTTCGCGATCTGGCAGCGGCTTATCAGGGG
CAAGCGCTTCGCGCTGATCCCGACTGGAGATTTTCCCAATATCTGAACAGCGAGGCTCGGCGGGGCGCCGAG
CAGGTAGATATTGCGCAGAAGTACTGGCAGGACAGCCTGGCCAAACTGCCTCCTGGCCCTCAGTTGCCCCTG
GTCAAGACGCCGGAGAATGTTGTACGGCCACGTTTCGTGCGCCGGCGGCATCAACTCCCCAGCGAGACTTGG
CAGACCTTGAGAAGACTGGCAGCGAGGAATGGCGTTACGCCAGCGATGATGCTGCTCTCTGCCTATGCGGAG
GTCTTGGGCAGGTGGAGCCAAGAGCCCGAGTTTTCGTTGAATCTTCCGCTGTTCGACCGCAGGACTGACCAC
CCAGGAGTCGAGCATGTCGTGGCTGACTTCACCAACCTGCTGCTACTGCGCTGCGACTGCCGCCATGCAGCG
TCGTTTTCTGACCGCACGCACGAACTCCAGCGGCAATTTCACCGTGACGTCGCCCACTCTTCCTATTCGGCA
GTCAACGTACAACGCGACATGGTTAAGCATGGCTTCGCCGAAGGAGTCATGGCTCCGGTGGTGTTTGCCTGC
AATCTCGGGACCCCGTTGCTGACGCCGGAGTGCAAGACCACGCTTGGCCGCCTTCGCTACATGGTGTCCCAG
ACACCGCAGGTCTGGCTGGATCACCAGGTCTATGAGGACGAGGAGGGGCTCTTATTGGCGTGGGACGCAGTG
GAGGAGCTGTTCCCCGAAGGGGTGGTCGACGACATGTTCTCCGCCTACTGCAACTTGTTGGAATGGCTGGCT
CAGGATGCGACTCATTGGCAACAGCTTATGCCATGGGTGCGGCGCAGCCACGAGCAGGACATCCGCACGGCC
GCTGTCGTGGACAACGGCATTGTGACCGATGCCTCGCTGCACCAGCGTATGTTCAATGTGGCCGCCACTATG
CCGGACCGCGTTGCTGTCGTTCTTGATGGTGGCGTCCTTTCCTATGGCGAGCTGGCGCGGCGCGCACTGCAA
GTGGCCGCGCTCTTGCATCGGCACGGTATCGAACCTGGTGAGCCAGTCGCCATCAGCCTGCCACGGGGCTTG
GACCAAGTGACAGCGGTATTCGGTGTTCTAGCCGCAGGTGCCTGCTACGTGCCCGTGGGAATGAGCCAGCCT
GCGGCCCGGCAGGCCAGGATCCATGAGACAGCTGGCATCCGTTGGGTCCTGACGGACTCCAGCGGTGTCGTC
ATGGCAACTCGTGAAGGTACCACCAGGCTGGACGTGGCCAGCGCTTGGCATATCGATCCTCCGTCAGAGTAC
CAGCCCGTCCGTGCGGACAGCAGCGCCTACATCATCTTTACCTCCGGCTCGACTGGCGAGCCCAAGGGCGTG
GAGGTAACCCACGCGGCAGCTGCCAACACCATCGATGTCCTCAACGCCCGCTATGGCGTGGGCCCCGACAGC
CGCGTGCTGGCCGTGTCCTCACTGGATTTCGACCTGTCGGTGTACGACCTCTTTGGCGTGCTCGGCGTCGGT
GGCGCGGTGGTGCTGCTCGACGAGGACCATCGCCGTGACGCCGCCGCTTGGCTGGAGCTCATCCACCAGCAC
CGGGTCACCCTGTGGAACTCCGTGCCGGTGCTGCTGGACATGCTGCTGGTGATGGCCGCCGAGGACCCTCGT
CCGCTGCCGTTCGAGCAGGTGTTCCTGTCCGGCGACTGGATAGGTCTGGACCTGCCCGGGCGGCTGTTCGCC
AAGACCTCCGGCAGCACGAAGCTGGTCGCCATGGGCGGCGCCACCGAGGCGGCCATCTGGTCGAACGCCTTC
GACGTGACCTTGCCGCTGCCGGCCCACTGGCGGTCCATCCCCTACGGCAGACCACTGGCCAACCAACGCTAC
CGGGTGGTCGACGCCCAGGGCCGGGACTGTCCGGACTGGGTGACCGGCGAGCTGTGGATCGGCGGTGCGGGT
GTCGCGCTCGGCTACCGGGGAGACCCGGCGCAGACCGCCGAGCGCTTCGTCGACTACAACGGCGAGCGCTGG
TACCGCACCGGCGACCTGGGGCGTTACTGGCCTGACGGCAACCTGGAGTTCCTCGGTCGGCGCGACCACCAG
GTCAAGGTGCGAGGCCACCGCATCGAACTGGGCGAGATCGAGGCGGCGCTGTCCGCCCTGCCCGGCGTGGCC
CGTGCGGTGGCGGTGACCATCGGCAAGCCGGTGGCTCTGGCCGCCGCTTTCGTGCCCACCGACCCCACGACA
CAGCCTCGTACCGACGAGTTGCTGGCCGCCCTGCGGCAACTGCTGCCCGACTACATGGTGCCGACTCACTTG
CAGGCCATCGATACCTTGCCCCTGAGCGGCAATGGCAAGGTCGATCGACAGGCCCTCGTGGCGCTGCTGGCT
ACCCAAGCCTCGACACGAGCGGCCTACGACCCGCCACAACCAGGTCTGGAGTGCGAGGTGGCCGATATCTGG
AGGGAGGTGCTGCAGTGCACCCCCCTTTCCAGAACGGACGACTTCTTCCTGATCGGCGGCGATAGCCTGCGA
GCTACGCAGATCGTGCAGTTGCTCCACTCGCGGCGGATCTCACCAGCACCCGTGCCGCTGTTTGTCCTGTTT
TCCAGCCCCACCATCGCCGCGCTCGCCCATCACATACGAGGACAGTGGCAGGCCCTGAGCATGACCGGAGCC
GAAGACTCCATTGAGGAAGGCATCCTATGA