ViewGene
Locus Name:
GeneID:
Location:

GeneID:5515
TrivialName: PA14_54940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54940
PAO1 Ortholog Locus:
Sequence Length:2985
Protein Length:994
Start: 4878535
Stop: 4875551
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO56101.1| (AE016865) yersiniabactin synthetase, salycilate ligase component [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 287/507 (56%), Positives = 355/507 (70%), Gaps = 2/507 (0%)
Sequence:
ATGGTTACTAATCGTTGTGATATTGCTGCACTGGAACAGCGCTATGAGAGCCTAGGCTATTGGAAGCGCCAG
ACATTGCCTGAATGGCTCAGAATCGCCGCCGATTCGTATGCACAGGCGCCGGCCCTGATTGATGGTGCTTCC
CGGCTCACCTACAGCGAACTTGATCTCAAAGTGGATCGCCTTGCCGCCGGATTTGACCGCATCGGCATTGCC
AGAGGCGACCGGGTGCTGATGCAGCTGCCCAACGGCGAAGCGTTCGTGGTCTGCCTATTCTCACTTTTTCGG
CTCGGGGCGCTCCCCATCCTGGCCATGCCGGCCCATCGCGAGAAGGAAGTACTGGAGTTGTGCCGCCTGGCC
GAGCCCAGCGCGTACATCATTCCGAGGTCTTTCCTAGGATTCGATTATCTTGCGCTAGCCGAGCGTGCCCGG
GCCAGCGTGCCTTCCATCAAGAACATTCTCGTAGAGGGCGATCCGGGCCCCTGGCTGAGTCTGAGCCAGGTA
GAAGATGCTCCCCGCAGCTTCGCGCCTCCTGCGCACACGGATACCGCCCTGCTGTTGCTCTCTGGGGGTACC
ACCGGTACGCCGAAACTGATTCCGCGCAGGCACACCGACTATCTCTACAACGCCGTCGAGTCAGCCCGCCTG
TGTGGCTTTTCCCGGGAGTCCGTCTACCTCGCCGCCTTGCCAGTGGCCCACAACTTTCCGCTGGCCTGCCCA
GGTCTTATCGGCACGCTCAGCGTCGGCGGGTGCGTGGTGATGGCCAAGGCGCCCAGCGCCGATGAGACCTTC
CCATTGATCGTGAAGGAACGAGTGACACACACGGCGCTGGTTCCGCCGCTAGTCAAGCTCTGGCTGGAAGCG
CGCAAATGGGATACCAGCGACCTTTCGAGTTTGAAGCTCCTTCAGGTGGGTGGCGCGCGGCTTGATCCGGAT
CTCGCCCGGCAAATCACGCCCAGCCTGGGCTGCCAGCTTCAACAGGTCTTTGGCATGGCTGAGGGACTGCTG
TGCTACACGCGCCTGGACGACCCATTGGAGGTGGCGCTGAACACCCAAGGGCGGCCGCTGTGCCCTGATGAC
GAACTGCGGATCGTGGGACCGGATGGCCAGCCTGTATCCGCGGGGCAAGTCGGCGAGCTTCAAGTTCGAGGC
CCGTACACCATTAGAGGCTATTACCGAGTGCCCGAGCACAACGCCCGCAGCTTCACGACTGACGGATTCTAC
CAATCGGGTGATCTGGTGCAGCTCACTCCCGAAGGCAATCTGGTGGTTCATGGGCGGATCAAGGAGCAGATC
AATCGAGCCGGCGAGAAGATCGCCTCTGCTGAATTGGAAGGCGCCGTCGAACTGCATCCCGATGTCGAGAGC
TGCGCCGTAGTCGCGGTACCCGACGAAAGACTGGGCGAGAGGACATGCGCAGTACTCCTCGCCGGCGAGGGG
AATCCCTCCCTGGCAGATCTCCATGTGTTCCTGCGCACTGCGGGCCTGCCACAGTACAAACTGCCGGACCAA
CTACTCAGAGTTGACCGCTGGCCACTGACCACCATCGGAAAAATCGACAAGCAGCGGCTCATGATGCTCGCC
CGGGACGACTCGACCATGCCCGACATCCGTCCTGCCGCAACTCCACTTTCCTATGTCGAGAGTGAAATGCCG
GTGCACTGGCCGCCGATAGACATACTCACTGCGCTTGCTGACTCCGGAATCGCAGGGGATTACGCCCTGTAC
GAACAACCGGATGAGTGGTCCATCGGACTGGGCAGAGTTGCCACGCTGCGCGTTGGTGCCGAGCAAGCCGAA
CTGACCCAGGGCGAGAAATGTAAGACCTTCCGCAATCTGCGCCTGGTCGACTCCATCGCCGAGGCCACGGAC
GAGATCGCGGTTGCGGACTGGCGTGCCTATGGCGTTGCACGTTTTGAGCTTTCGCAGATATTCCATGGCCTG
ACCGCGCCGGCGCACGATTCACCGCTCATGGAACTGTTCGTGCCTGCCCTCGAAGTCCGCATCCGCGATGGG
AAGGCGCGCCTTCGCGCGATAGATCCTGCCATGTTGCCCACGCTGAGAGCTGTGATCGAACGGGTGCAACAG
CAGAGCGAAAGCACTCCCATTGCTCCAGAAGACGACGAGACGCTGCTCGCCTTGCGTCAACATGAAGAAGAT
ATCTATAGAGCTAACGTCCAGCAGGCGGTGGACGAAATCAATGCGCGCAAGTACCAGAAGGTGATTCTGTCA
CGCCGAATTCCCCTCCCGGCCGGGGTCGACATCCTTCAAACCTACCGCGCAGGCAGGGCGCGCAATACTCCT
GCCCGGTCATTCCTGGTCCAACTCGGCGGATCACGAATGGCTGGCTTCAGCCCGGAAACGGTAGTCGAGGTG
ACCTCCGATGGTTGGGTCAGCACGCAGCCTCTGGCCGGAACCCGCGCCCTGGGCGAGTCCCATGAAGAAGAG
GAGCGGCTGCGCATGGATCTCCTCAACGATGCCAAGGAGGTGGCCGAGCACGCCGTTTCGGTCAAGCTAGCC
CAAGACGAAGTGGCAAAGGTATGCCGGGACGCAAGCGTCAGCGAGTTCATGCATGTGCTGCGGCGGGGCTCC
GTGCAGCATCTCGCCTCTCGCGTGAATGGCCGCCTGCATGAAGGCCGTACCGCCTGGGATGCCTTCGAAGCG
CTGTTTCCCGCGGTCACCGCATCCGGTATCCCGAAACAGGCTGGCATCGAAGCCATCGGCCGCTTCGAGCGC
ACGGCCAGGGGCTGGTACAGCGGCTGCATGCTGGTGGTGGACAGTCAGGGGGCTTTGGATGCGGCACTCGTG
CTGCGCTCCATCTACCAGCGTGAAGGCGAAAGCTGGCTCCAGGCTGGAGCCGGCATCGTCGGCCAATCCAGA
CCTGCACGCGAACTCGAGGAGACCAACGAGAAGCTCGCTTGCATCCTCAAGTACGTGGTGCTCAAACCGGCC
GCCATCGGCGAACCACTGGAGGGTGTCCGATGA
Translation:
MVTNRCDIAALEQRYESLGYWKRQTLPEWLRIAADSYAQAPALIDGASRLTYSELDLKVDRLAAGFDRIGIA
RGDRVLMQLPNGEAFVVCLFSLFRLGALPILAMPAHREKEVLELCRLAEPSAYIIPRSFLGFDYLALAERAR
ASVPSIKNILVEGDPGPWLSLSQVEDAPRSFAPPAHTDTALLLLSGGTTGTPKLIPRRHTDYLYNAVESARL
CGFSRESVYLAALPVAHNFPLACPGLIGTLSVGGCVVMAKAPSADETFPLIVKERVTHTALVPPLVKLWLEA
RKWDTSDLSSLKLLQVGGARLDPDLARQITPSLGCQLQQVFGMAEGLLCYTRLDDPLEVALNTQGRPLCPDD
ELRIVGPDGQPVSAGQVGELQVRGPYTIRGYYRVPEHNARSFTTDGFYQSGDLVQLTPEGNLVVHGRIKEQI
NRAGEKIASAELEGAVELHPDVESCAVVAVPDERLGERTCAVLLAGEGNPSLADLHVFLRTAGLPQYKLPDQ
LLRVDRWPLTTIGKIDKQRLMMLARDDSTMPDIRPAATPLSYVESEMPVHWPPIDILTALADSGIAGDYALY
EQPDEWSIGLGRVATLRVGAEQAELTQGEKCKTFRNLRLVDSIAEATDEIAVADWRAYGVARFELSQIFHGL
TAPAHDSPLMELFVPALEVRIRDGKARLRAIDPAMLPTLRAVIERVQQQSESTPIAPEDDETLLALRQHEED
IYRANVQQAVDEINARKYQKVILSRRIPLPAGVDILQTYRAGRARNTPARSFLVQLGGSRMAGFSPETVVEV
TSDGWVSTQPLAGTRALGESHEEEERLRMDLLNDAKEVAEHAVSVKLAQDEVAKVCRDASVSEFMHVLRRGS
VQHLASRVNGRLHEGRTAWDAFEALFPAVTASGIPKQAGIEAIGRFERTARGWYSGCMLVVDSQGALDAALV
LRSIYQREGESWLQAGAGIVGQSRPARELEETNEKLACILKYVVLKPAAIGEPLEGVR*
AnnotationID:5517GeneID:5515
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 16:04:06
Gene Name:
Confidence Code:3
GeneProduct:putative siderophore biosynthesis enzyme
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1021, pfam00425
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Putative siderophore biosynthesis
Homology:
Full Length:
gi|36785662|emb|CAE14617.1|  unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
     Length=977
     Score =  899 bits (2323),  Expect = 0.0
     Identities = 477/961 (49%), Positives = 627/961 (65%), Gaps = 12/961 (1%)

N-Terminus:
gi|28853032|gb|AAO56101.1|  yersiniabactin synthetase, salycilate ligase component [Pseudomonas 
syringae pv. tomato str. DC3000]
     Length=522
     Score =  559 bits (1440),  Expect = 2e-157
     Identities = 287/507 (56%), Positives = 355/507 (70%), Gaps = 2/507 (0%)
gi|71558136|gb|AAZ37347.1|  yersiniabactin synthetase, salycilate ligase component Irp5 [Pseudomonas 
syringae pv. phaseolicola 1448A]
     Length=522
     Score =  551 bits (1420),  Expect = 5e-155
     Identities = 282/507 (55%), Positives = 355/507 (70%), Gaps = 2/507 (0%)
alicyl-AMP ligase [Yersinia pestis KIM]
gi|45441464|ref|NP_993003.1|  yersiniabactin siderophore biosynthetic protein [Yersinia pestis 
biovar Medievalis str. 91001]
gi|16122155|ref|NP_405468.1|  yersiniabactin siderophore biosynthetic protein [Yersinia pestis CO92]
gi|3818608|gb|AAC69591.1|  salicyl-AMP ligase YbtE [Yersinia pestis]
     Length=525
     Score =  524 bits (1350),  Expect = 6e-147
     Identities = 275/522 (52%), Positives = 352/522 (67%), Gaps = 6/522 (1%)
gi|2765198|emb|CAA73130.1|  Irp5 protein [Yersinia enterocolitica]
     Length=525
     Score =  524 bits (1350),  Expect = 6e-147
     Identities = 274/522 (52%), Positives = 351/522 (67%), Gaps = 6/522 (1%)

C-Terminus:
gi|46913286|emb|CAG20074.1|  hypotetical anthranilate synthase [Photobacterium profundum SS9]
     Length=467
     Score =  349 bits (896),  Expect = 3e-94
     Identities = 192/431 (44%), Positives = 267/431 (61%), Gaps = 11/431 (2%)
gi|21225951|ref|NP_631730.1|  putative lyase [Streptomyces coelicolor A3(2)]
     Length=471
     Score =  305 bits (782),  Expect = 4e-81
     Identities = 194/460 (42%), Positives = 256/460 (55%), Gaps = 34/460 (7%)
gi|5420055|emb|CAB46570.1|  salicylate synthetase, Irp9 [Yersinia enterocolitica]
     Length=434
     Score =  260 bits (664),  Expect = 2e-67
     Identities = 175/426 (41%), Positives = 237/426 (55%), Gaps = 23/426 (5%)
Structural Features:
N-Terminus:
gnl|CDD|10749 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, 
transport, and catabolism].
             CD-Length = 542 residues,  95.9% aligned
             Score =  623 bits (1608), Expect = 3e-179

C-Terminus:
pfam00425, Chorismate_bind, chorismate binding enzyme. This family includes the catalytic 
regions of the chorismate binding enzymes anthranilate synthase, isochorismate synthase, 
aminodeoxychorismate synthase and para-aminobenzoate synthase.
             CD-Length = 263 residues,  99.2% aligned
             Score =  211 bits (538), Expect = 4e-55
Genomic Context:






   
Comment:
N-terminal region highly similar Irp5 protein and C-terminal region similar to 
Irp9 protein of Yersinia enterocolitica


















    ReferenceID:11023




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5515
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197090
                           emb|CAE14617.1|
                           (BX571866) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           1007
                           48.06
                           63.25
                           43
                           2324.0
     

     
     
197091
                           gb|AAO56101.1|
                           (AE016865) yersiniabactin synthetase, salycilate ligase component [Pseudomonas syringae pv. tomato str. DC3000]
                           998
                           29.05
                           36.27
                           480
                           1439.0
     

     
     
197097
                           gb|AAC69591.1|
                           (AF091251) salicyl-AMP ligase YbtE [Yersinia pestis]
                           1004
                           28.08
                           35.35
                           489
                           1349.0
     

     
     
197096
                           emb|CAC90723.1|
                           (AJ414150) yersiniabactin siderophore biosynthetic protein [Yersinia pestis CO92]
                           1004
                           28.08
                           35.35
                           489
                           1349.0
     

     
     
197094
                           emb|CAA21394.1|
                           (AL031866) ybtE [Yersinia pestis]
                           1004
                           28.08
                           35.35
                           489
                           1349.0
     

     






      

          
GC ORFID: 48517How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 75372Stop: 78356

          
Length: 2985


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4228 translation of PA4228Homolog Bit Score 503.0

          
Other Homologs:  t_PA4228 translation of PA4228 (BLASTP 503)

          
GC ORF Sequence

           
ATGGTTACTAATCGTTGTGATATTGCTGCACTGGAACAGCGCTATGAGAGCCTAGGCTATTGGAAGCGCCAG 
ACATTGCCTGAATGGCTCAGAATCGCCGCCGATTCGTATGCACAGGCGCCGGCCCTGATTGATGGTGCTTCC 
CGGCTCACCTACAGCGAACTTGATCTCAAAGTGGATCGCCTTGCCGCCGGATTTGACCGCATCGGCATTGCC 
AGAGGCGACCGGGTGCTGATGCAGCTGCCCAACGGCGAAGCGTTCGTGGTCTGCCTATTCTCACTTTTTCGG 
CTCGGGGCGCTCCCCATCCTGGCCATGCCGGCCCATCGCGAGAAGGAAGTACTGGAGTTGTGCCGCCTGGCC 
GAGCCCAGCGCGTACATCATTCCGAGGTCTTTCCTAGGATTCGATTATCTTGCGCTAGCCGAGCGTGCCCGG 
GCCAGCGTGCCTTCCATCAAGAACATTCTCGTAGAGGGCGATCCGGGCCCCTGGCTGAGTCTGAGCCAGGTA 
GAAGATGCTCCCCGCAGCTTCGCGCCTCCTGCGCACACGGATACCGCCCTGCTGTTGCTCTCTGGGGGTACC 
ACCGGTACGCCGAAACTGATTCCGCGCAGGCACACCGACTATCTCTACAACGCCGTCGAGTCAGCCCGCCTG 
TGTGGCTTTTCCCGGGAGTCCGTCTACCTCGCCGCCTTGCCAGTGGCCCACAACTTTCCGCTGGCCTGCCCA 
GGTCTTATCGGCACGCTCAGCGTCGGCGGGTGCGTGGTGATGGCCAAGGCGCCCAGCGCCGATGAGACCTTC 
CCATTGATCGTGAAGGAACGAGTGACACACACGGCGCTGGTTCCGCCGCTAGTCAAGCTCTGGCTGGAAGCG 
CGCAAATGGGATACCAGCGACCTTTCGAGTTTGAAGCTCCTTCAGGTGGGTGGCGCGCGGCTTGATCCGGAT 
CTCGCCCGGCAAATCACGCCCAGCCTGGGCTGCCAGCTTCAACAGGTCTTTGGCATGGCTGAGGGACTGCTG 
TGCTACACGCGCCTGGACGACCCATTGGAGGTGGCGCTGAACACCCAAGGGCGGCCGCTGTGCCCTGATGAC 
GAACTGCGGATCGTGGGACCGGATGGCCAGCCTGTATCCGCGGGGCAAGTCGGCGAGCTTCAAGTTCGAGGC 
CCGTACACCATTAGAGGCTATTACCGAGTGCCCGAGCACAACGCCCGCAGCTTCACGACTGACGGATTCTAC 
CAATCGGGTGATCTGGTGCAGCTCACTCCCGAAGGCAATCTGGTGGTTCATGGGCGGATCAAGGAGCAGATC 
AATCGAGCCGGCGAGAAGATCGCCTCTGCTGAATTGGAAGGCGCCGTCGAACTGCATCCCGATGTCGAGAGC 
TGCGCCGTAGTCGCGGTACCCGACGAAAGACTGGGCGAGAGGACATGCGCAGTACTCCTCGCCGGCGAGGGG 
AATCCCTCCCTGGCAGATCTCCATGTGTTCCTGCGCACTGCGGGCCTGCCACAGTACAAACTGCCGGACCAA 
CTACTCAGAGTTGACCGCTGGCCACTGACCACCATCGGAAAAATCGACAAGCAGCGGCTCATGATGCTCGCC 
CGGGACGACTCGACCATGCCCGACATCCGTCCTGCCGCAACTCCACTTTCCTATGTCGAGAGTGAAATGCCG 
GTGCACTGGCCGCCGATAGACATACTCACTGCGCTTGCTGACTCCGGAATCGCAGGGGATTACGCCCTGTAC 
GAACAACCGGATGAGTGGTCCATCGGACTGGGCAGAGTTGCCACGCTGCGCGTTGGTGCCGAGCAAGCCGAA 
CTGACCCAGGGCGAGAAATGTAAGACCTTCCGCAATCTGCGCCTGGTCGACTCCATCGCCGAGGCCACGGAC 
GAGATCGCGGTTGCGGACTGGCGTGCCTATGGCGTTGCACGTTTTGAGCTTTCGCAGATATTCCATGGCCTG 
ACCGCGCCGGCGCACGATTCACCGCTCATGGAACTGTTCGTGCCTGCCCTCGAAGTCCGCATCCGCGATGGG 
AAGGCGCGCCTTCGCGCGATAGATCCTGCCATGTTGCCCACGCTGAGAGCTGTGATCGAACGGGTGCAACAG 
CAGAGCGAAAGCACTCCCATTGCTCCAGAAGACGACGAGACGCTGCTCGCCTTGCGTCAACATGAAGAAGAT 
ATCTATAGAGCTAACGTCCAGCAGGCGGTGGACGAAATCAATGCGCGCAAGTACCAGAAGGTGATTCTGTCA 
CGCCGAATTCCCCTCCCGGCCGGGGTCGACATCCTTCAAACCTACCGCGCAGGCAGGGCGCGCAATACTCCT 
GCCCGGTCATTCCTGGTCCAACTCGGCGGATCACGAATGGCTGGCTTCAGCCCGGAAACGGTAGTCGAGGTG 
ACCTCCGATGGTTGGGTCAGCACGCAGCCTCTGGCCGGAACCCGCGCCCTGGGCGAGTCCCATGAAGAAGAG 
GAGCGGCTGCGCATGGATCTCCTCAACGATGCCAAGGAGGTGGCCGAGCACGCCGTTTCGGTCAAGCTAGCC 
CAAGACGAAGTGGCAAAGGTATGCCGGGACGCAAGCGTCAGCGAGTTCATGCATGTGCTGCGGCGGGGCTCC 
GTGCAGCATCTCGCCTCTCGCGTGAATGGCCGCCTGCATGAAGGCCGTACCGCCTGGGATGCCTTCGAAGCG 
CTGTTTCCCGCGGTCACCGCATCCGGTATCCCGAAACAGGCTGGCATCGAAGCCATCGGCCGCTTCGAGCGC 
ACGGCCAGGGGCTGGTACAGCGGCTGCATGCTGGTGGTGGACAGTCAGGGGGCTTTGGATGCGGCACTCGTG 
CTGCGCTCCATCTACCAGCGTGAAGGCGAAAGCTGGCTCCAGGCTGGAGCCGGCATCGTCGGCCAATCCAGA 
CCTGCACGCGAACTCGAGGAGACCAACGAGAAGCTCGCTTGCATCCTCAAGTACGTGGTGCTCAAACCGGCC 
GCCATCGGCGAACCACTGGAGGGTGTCCGATGA