ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5514

TrivialName: PA14_54950

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_54950

PAO1 Ortholog Locus:

Sequence Length: 1347

Protein Length: 448

Start: 4880135

Stop: 4878789

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAC89853.1| (AJ414146) putative TonB-dependent outer membrane receptor [Yersinia pestis CO92] Identities = 117/439 (26%), Positives = 190/439 (43%), Gaps = 56/439 (12%)

Sequence:

ATGTACGCATTCAGCTCGCGTCTGGAGTACGACTTCGATGACATGACCGTCACTGCACAGACTAGTTATGCG
CGCCTGAACGACCAGAACGACTACAACTTCCCGGATGCGAGGATTGCCAGCGACTTCAGCGGCCTGCCGCCC
GAGCAATTCCTGGATCCAGCGACCAACTTCATCGACTGGCGAAAACGCGACTCTCGACTGACACAAGAATTC
AGGCTGGGATCGCTACCGGGGGCCGATATCGGCTGGCTTGCGGGCGTGGTGTTCTATCAGGACCGAGCGCGC
CGGGACAGGACCAGCGAGATGTGGTACTTCGGGCCTTCTGCCAGTGGCAGTACCGACTACGACCTGAAGACG
ACAGGTCAGGCATTGTTTGGCGAAGCCACCATTCCCTTGAATGAGCGCCTGCAACTCACGGTCGGAGCGCGC
GCGACACGCGAAGACAAGGATTTTCATTCGGAGTACCACAGCAACGGAGCAGAAGGCGCGGTGCCTTACTTC
CGTGAGTCTGGATCAGAGGACTATCGCTTCCTGACGGGCCGTACCTCGTTGTCCTATCGCTGGACCGACGAT
CTGATGACCTATGCCAGCGTGTCGAGGGGGTACAAAAGCGGCGGATTCGGCCTGGGTAGCTCGTTGATGTGG
AGCGGCGTGCCGCGAGAGCCCTACGACTCCTCGACCGTCATGAGCTATGAGCTCGGTATGCGCTCCAATTGG
CTCGACGATTCGTTGGTGGTCAATGGTGCGTTGTTCTTCAACGATATGAGCAAGGAGCAGATGCAGAGCTGG
GACTACGAGAACTTCACCGGAAAGAACCTGAACCTGGATGCGCGGTCGGCCGGCTTCGAGTTGGACGCCCGT
TACCTCGCAAGCCGCAATTGGTGGATGGAGGTAGGCGTGGCCTATACATACAGTTCGCTGCGCCACGTTTCT
GCAGAGGCGGCCGCGCTCCAGGACGGCTTGCGAAGTGGCAACAGGCTTCCAAGCGTACCGGAATGGACGGCA
AGGACCGCGCTGGGATATGAGGCGCTGGGTCGTGAACTTGGGTTCTCCGGATGGCTGGCAGAGCAAAGGGTG
AACGCAATGCTCACATACAACTTTGTCGGCAGCCGTTTCACCGATGCTTCCAACTTCGGCAGGCTCGCTCCG
GTTCACTTGATCTCGGCGCGTCTGGGTATCGATTGGGGCGACGGGGAGTTCTACCTGTTCGGGGACAACCTG
CTGGACAAGAGATACATGACGATCAAGGACCGCTTCGGCACCGACCCCCAGGGCCAGCCGGTCTACGGCGTT
TCCTATGCGCGCGGTGCAACCCTCGGGGTGGGGATGGTGCTGCGCTTCTGA

Translation:

MYAFSSRLEYDFDDMTVTAQTSYARLNDQNDYNFPDARIASDFSGLPPEQFLDPATNFIDWRKRDSRLTQEF
RLGSLPGADIGWLAGVVFYQDRARRDRTSEMWYFGPSASGSTDYDLKTTGQALFGEATIPLNERLQLTVGAR
ATREDKDFHSEYHSNGAEGAVPYFRESGSEDYRFLTGRTSLSYRWTDDLMTYASVSRGYKSGGFGLGSSLMW
SGVPREPYDSSTVMSYELGMRSNWLDDSLVVNGALFFNDMSKEQMQSWDYENFTGKNLNLDARSAGFELDAR
YLASRNWWMEVGVAYTYSSLRHVSAEAAALQDGLRSGNRLPSVPEWTARTALGYEALGRELGFSGWLAEQRV
NAMLTYNFVGSRFTDASNFGRLAPVHLISARLGIDWGDGEFYLFGDNLLDKRYMTIKDRFGTDPQGQPVYGV
SYARGATLGVGMVLRF*

AnnotationID:5516 GeneID:5514

AnnotatorUID: danlee

Modification Date/Time: 2005-10-03 16:04:38

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: cd01347, pfam00593, COG1629

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|69152776|gb|EAN65926.1|  TonB-dependent receptor [Paracoccus denitrificans PD1222]
     Length=713
     Score =  209 bits (533),  Expect = 1e-52
     Identities = 145/439 (33%), Positives = 227/439 (51%), Gaps = 28/439 (6%)

Structural Features:

cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channel.               
             CD-Length = 672 residues, only  64.3% aligned
             Score =  108 bits (270), Expect = 2e-24

pfam00593, TonB_dep_Rec, TonB dependent receptor..
             CD-Length = 712 residues, only  57.2% aligned
             Score =  104 bits (259), Expect = 3e-23

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion 
transport and metabolism].
             CD-Length = 768 residues, only  57.7% aligned
             Score = 80.7 bits (197), Expect = 3e-16

Genomic Context:

Comment:

ReferenceID:11021

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28165