ViewGene
Locus Name:
GeneID:
Location:

GeneID:5513
TrivialName: PA14_54960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54960
PAO1 Ortholog Locus:
Sequence Length:969
Protein Length:322
Start: 4881058
Stop: 4880090
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05723.1|AE004659_9 (AE004659) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Sequence:
GTGAATAGCCGCTCAGCGCGAGTGGAATCTCCGCCGAGTCTTCTCCTGCTCTTAAGAAGGTTTTGGACAATG
TGTGAACGTCAGATCTTGTCACGCGCACTTTCCGCCAGTGCCCTGGCGGGCATGCTGCAACTCAGTTTCCCT
GCGGGCGCCGCCGCTCCTTTGAACGATGAAGAGTCGGTAGTTCTGGACTCAATTACCGTGACGGCGCGTAAG
CGCGAGGAGAATCTCAACGATGTTCCCGGGTCGGTGCACGTGGAGACTGGCCGTGACCTGGAGCGAAAACGC
ATGCTCGATGGAGCGGCGGCATTGCGCGATGTGGCAGGTGCGAGCGTGGGCATTTTCGGCGATCGCTCCAAC
GCTTTCGTCGTCCTGCGCGGCGTGGCACCCATTCTCACGCCGCTCAGTCCCGACGACAGCTCAGTACTGACC
TTCGTGGATGGTGCGCCGATGCCGATTGGCGCATCGTTTTCCCCGTATCTGGATCTTGAGCGAATGGAGGTG
ATGAAGGGGCCACAGAGCACGCTCTTCGGTCGCAACACCTCGGGCGGCGCGATCAACCTTGTGCCGGTGAAG
CCAAACCATGAATTCGAAGCCTCGGTTCGGGGCGAAGGGGGGACCGATGGCATCTTCCGCACTGAAGCCATC
ATCAACGGCTCACTCGTTCCGGAAACGCTATCCGCGCGCCTGGCTCTCCGGCGCTCAGGCGCCGACGGCTAC
ATCAACAACGTCGCCGGACGCGACTTGGGAGAGGAGCGGACCTGGGCCGCGCGCGGCTCTGTGCTGTTCACG
CCTTCCTCCCGGGTGCGATGGCTCCTGAGTGCTCAGGGGGAGAGCACGGATAGCGCGCCAACGGCCTACATT
GCATACCGGCCGGGGGAGCGAAGACCGCGGCACAGAACAAGACGATCGACGACATCCGGATGTACGCATTCA
GCTCGCGTCTGGAGTACGACTTCGATGACATGA
Translation:
MNSRSARVESPPSLLLLLRRFWTMCERQILSRALSASALAGMLQLSFPAGAAAPLNDEESVVLDSITVTARK
REENLNDVPGSVHVETGRDLERKRMLDGAAALRDVAGASVGIFGDRSNAFVVLRGVAPILTPLSPDDSSVLT
FVDGAPMPIGASFSPYLDLERMEVMKGPQSTLFGRNTSGGAINLVPVKPNHEFEASVRGEGGTDGIFRTEAI
INGSLVPETLSARLALRRSGADGYINNVAGRDLGEERTWAARGSVLFTPSSRVRWLLSAQGESTDSAPTAYI
AYRPGERRPRHRTRRSTTSGCTHSARVWSTTSMT*
AnnotationID:5515GeneID:5513
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 16:04:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
weak match to putative TonB-dependent receptor.






 
Structural Features:
cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channel.
             CD-Length = 672 residues, only  30.1% aligned
             Score = 89.1 bits (220), Expect = 7e-19

COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion 
transport and metabolism].
             CD-Length = 699 residues, only  33.5% aligned
             Score = 82.3 bits (203), Expect = 7e-17






   
Genomic Context:






   
Comment:


















    ReferenceID:15378




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28163




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48515How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 72849Stop: 73817

          
Length: 969


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGAATAGCCGCTCAGCGCGAGTGGAATCTCCGCCGAGTCTTCTCCTGCTCTTAAGAAGGTTTTGGACAATG 
TGTGAACGTCAGATCTTGTCACGCGCACTTTCCGCCAGTGCCCTGGCGGGCATGCTGCAACTCAGTTTCCCT 
GCGGGCGCCGCCGCTCCTTTGAACGATGAAGAGTCGGTAGTTCTGGACTCAATTACCGTGACGGCGCGTAAG 
CGCGAGGAGAATCTCAACGATGTTCCCGGGTCGGTGCACGTGGAGACTGGCCGTGACCTGGAGCGAAAACGC 
ATGCTCGATGGAGCGGCGGCATTGCGCGATGTGGCAGGTGCGAGCGTGGGCATTTTCGGCGATCGCTCCAAC 
GCTTTCGTCGTCCTGCGCGGCGTGGCACCCATTCTCACGCCGCTCAGTCCCGACGACAGCTCAGTACTGACC 
TTCGTGGATGGTGCGCCGATGCCGATTGGCGCATCGTTTTCCCCGTATCTGGATCTTGAGCGAATGGAGGTG 
ATGAAGGGGCCACAGAGCACGCTCTTCGGTCGCAACACCTCGGGCGGCGCGATCAACCTTGTGCCGGTGAAG 
CCAAACCATGAATTCGAAGCCTCGGTTCGGGGCGAAGGGGGGACCGATGGCATCTTCCGCACTGAAGCCATC 
ATCAACGGCTCACTCGTTCCGGAAACGCTATCCGCGCGCCTGGCTCTCCGGCGCTCAGGCGCCGACGGCTAC 
ATCAACAACGTCGCCGGACGCGACTTGGGAGAGGAGCGGACCTGGGCCGCGCGCGGCTCTGTGCTGTTCACG 
CCTTCCTCCCGGGTGCGATGGCTCCTGAGTGCTCAGGGGGAGAGCACGGATAGCGCGCCAACGGCCTACATT 
GCATACCGGCCGGGGGAGCGAAGACCGCGGCACAGAACAAGACGATCGACGACATCCGGATGTACGCATTCA 
GCTCGCGTCTGGAGTACGACTTCGATGACATGA