ViewGene
Locus Name:
GeneID:
Location:

GeneID:5512
TrivialName: PA14_54970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54970
PAO1 Ortholog Locus:
Sequence Length:1758
Protein Length:585
Start: 4882919
Stop: 4881162
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO56107.1| (AE016865) ABC transporter, ATP-binding/permease protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 211/578 (36%), Positives = 321/578 (55%), Gaps = 11/578 (1%)
Sequence:
ATGGAGGCGGTCACCTCTTGGACAAGCATTCGACGCATCATCCAGCGCAGTGGCGCGCCTACCTCCGCCCTC
ACCTTGGGATTGGCGCTGCGCGTGCTGGAACGGTGTTCCGAAGTGCTGCCCTATCTGCTGTGCTGGCTATGG
CTTGGCGCCGTCCTGCCACTTTCTTTGCCAGGTTTTGCCTGGACAGCCACCTGGGCGGCCAGTCCGCAATGG
CTGGCTCTGACCCTAGCTTGCCTGTTCCTCATGCAATGGGCTTTCGCCTTCGGCGGCCAGAAATGTTGCTTT
CTGAACAGTTACCAGATCATCGAACGCTATCGACAGGGGCTGCTCGAGCGAGTCCGCAACATGCCGATCGGC
GTGTTGAGAGGACGGCAGGTGGGGCACATGGCCGACCTGCTCACCGACGACATCAATCGTGTCGAAGCCATA
TTTGCCCATGTCCTGGCGGATTTCGTCGCCGCCGCGGGCCTGGCGCTGACGACGATCCTGCTGCTGGCAGCT
ATCGAGTGGCGGCTGGCCCTGGCGCTTGCTGGGCTCGCGCCCCTGGCCATGCTCGTCCTGATTGCCAGTGGG
CGACTGTTCGAGCAGGCGGTCCAGCGCAAACACGCGCGCTTCAAGGCGACATCCGGGATGTTGGTGGAGTTC
ATCGGCGGCCTGGCGACGTTACGCCTCTTCAATCACTCGCGCGCCTGGTCGCAGCAGTTAGACCAGGCGTTC
ACCGAACTCAAGGCGCTCAGCCTGGGGATCGAGAAATGGGGCGGCGGTCCGGTCATGCTCTTCAGACTGATC
GTCGAGTGTGGCCTCGTCGTCCTGTTCATTGCAGGCGGCTGGAGCATGTTCTCCCATGAATACCCCGCGCTG
GTTTGGCTGGCGTTCATTCTGCTGTCTTACAAGTTCATTGGTCCGCTGCTGGAGTTGGCCGAATACTTGGTG
ATGCTCCGCCATGCTTGCCAGAGCGAGATGAAGCTCGACGAGCTATGGCGCGTCCCGCTCCTGCCCGAACCC
GCCCTGGCTAGGCGGCCGGATGGTCTGGCCGTGCAGTTCGATCGCGTGTCGTTCGCCTACGGCGATCGGCTC
GTGCTACGCGATGTCAGCTTCGTGGTGCCGCCTGGTAGCGTCACCGCCGTGGTTGGTCCTTCCGGCGCAGGC
AAGAGCACGCTGTTGCATCTGCTTGCGCGCTTTCATATGCCCGACAGCGGCGCGATACGCATTGGCGGCTTG
GATCTGCGTGATATCGGCTCCGACCAGTTGTATCGCGTCGTCAGCATGGTCTTCCAGCAGGTACAACTGTTC
GACGGCAGCATTATCGACAACGTGCGTGCAGGTCGCGAGCAGGCCAGCGACGAGGAGGTGATTCAGGCCGCC
GAGGCGGCTCATTGTGATGAGTTCATCGCCAGGCTTGCTGATGGCTACCAGACAAAGGTCGGCGAATCGGGG
TTCGGCCTTTCGGGAGGAGAGCGGCAGCGGCTGTCGATCGCCCGGGCACTGCTCAAGGATGCGCCGCTGCTC
CTGCTGGATGAAGTAACCGCCTCGGTAGACCCACGCTCCCAGCACGCCATCCAGACCTCTCTCGGCCAATTG
GCTGCGGGGCGCAGCGTCATCATGGTCGCCCACAGGCTCAACACCATCAGGCACGCCGACCAGATACTGGTT
CTGGATCAAGGCGCCTTGGTCGAGGCTGGAACCCACCAGTCCCTGCTTGCGAGAAATGGTCTGTACGCCGCG
ATGTGGAGGGCGCAAACATCCAACGGCTAG
Translation:
MEAVTSWTSIRRIIQRSGAPTSALTLGLALRVLERCSEVLPYLLCWLWLGAVLPLSLPGFAWTATWAASPQW
LALTLACLFLMQWAFAFGGQKCCFLNSYQIIERYRQGLLERVRNMPIGVLRGRQVGHMADLLTDDINRVEAI
FAHVLADFVAAAGLALTTILLLAAIEWRLALALAGLAPLAMLVLIASGRLFEQAVQRKHARFKATSGMLVEF
IGGLATLRLFNHSRAWSQQLDQAFTELKALSLGIEKWGGGPVMLFRLIVECGLVVLFIAGGWSMFSHEYPAL
VWLAFILLSYKFIGPLLELAEYLVMLRHACQSEMKLDELWRVPLLPEPALARRPDGLAVQFDRVSFAYGDRL
VLRDVSFVVPPGSVTAVVGPSGAGKSTLLHLLARFHMPDSGAIRIGGLDLRDIGSDQLYRVVSMVFQQVQLF
DGSIIDNVRAGREQASDEEVIQAAEAAHCDEFIARLADGYQTKVGESGFGLSGGERQRLSIARALLKDAPLL
LLDEVTASVDPRSQHAIQTSLGQLAAGRSVIMVAHRLNTIRHADQILVLDQGALVEAGTHQSLLARNGLYAA
MWRAQTSNG*
AnnotationID:5514GeneID:5512
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 17:05:18
Gene Name:
Confidence Code:3
GeneProduct:possible ABC transporter protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1132
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48765325|ref|ZP_00269876.1|  COG1132: ABC-type multidrug transport system, ATPase and permease 
components [Rhodospirillum rubrum]
     Length=572
     Score =  513 bits (1320),  Expect = 1e-143
     Identities = 276/574 (48%), Positives = 370/574 (64%), Gaps = 9/574 (1%)

gi|35210882|dbj|BAC88262.1|  HlyB/MsbA family ABC transporter [Gloeobacter violaceus PCC 7421]
     Length=585
     Score =  364 bits (934),  Expect = 6e-99
     Identities = 226/570 (39%), Positives = 315/570 (55%), Gaps = 9/570 (1%)

gi|69152725|gb|EAN65875.1|  ABC transporter, transmembrane region:ABC transporter [Paracoccus denitrificans PD1222]
     Length=592
     Score =  356 bits (913),  Expect = 2e-96
     Identities = 224/582 (38%), Positives = 335/582 (57%), Gaps = 19/582 (3%)

gi|71557607|gb|AAZ36818.1|  ABC transporter, ATP-binding/permease protein [Pseudomonas syringae 
pv. phaseolicola 1448A]
     Length=581
     Score =  347 bits (890),  Expect = 7e-94
     Identities = 213/568 (37%), Positives = 320/568 (56%), Gaps = 10/568 (1%)

gi|28853038|gb|AAO56107.1|  ABC transporter, ATP-binding/permease protein [Pseudomonas syringae 
pv. tomato str. DC3000]
     Length=581
     Score =  345 bits (884),  Expect = 3e-93
     Identities = 211/578 (36%), Positives = 321/578 (55%), Gaps = 11/578 (1%)






 
Structural Features:
COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].
             CD-Length = 567 residues,  96.6% aligned
             Score =  308 bits (791), Expect = 9e-85

COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal 
double-glycine peptidase domain [Defense mechanisms].
             CD-Length = 709 residues, only  72.6% aligned
             Score =  285 bits (732), Expect = 8e-78

COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and 
ATPase components [Posttranslational modification, protein turnover, chaperones].
             CD-Length = 497 residues, only  51.9% aligned
             Score =  243 bits (622), Expect = 4e-65

COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and 
permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
             CD-Length = 559 residues,  91.9% aligned
             Score =  233 bits (595), Expect = 6e-62






   
Genomic Context:






   
Comment:
Part of a 6-gene cluster of possible ABC-type transporters (including PA14_54970, 
PA14_54980, PA14_55000, PA14_55020, PA14_55030, and PA14_55040).


















    ReferenceID:11017




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28161




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5512
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197057
                           gb|AAK23295.1|
                           (AE005806) ABC transporter, HlyB/MsbA family [Caulobacter crescentus CB15]
                           711
                           29.39
                           42.19
                           194
                           603.0
     

     
     
197051
                           emb|CAD14006.1|
                           (AL646059) PROBABLE COMPOSITE ATP-BINDING TRANSMEMBRANE ABC TRANSPORTER PROTEIN [Ralstonia solanacearum]
                           655
                           29.00
                           43.96
                           133
                           592.0
     

     
     
197059
                           emb|CAC45699.1|
                           (AL591786) PROBABLE ABC TRANSPORTER ATP-BINDING TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
                           684
                           28.94
                           43.12
                           156
                           574.0
     

     
     
197054
                           emb|CAE41201.1|
                           (BX640413) ABC transporter, ATP-binding protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           701
                           27.53
                           41.08
                           212
                           584.0
     

     
     
197058
                           emb|CAE36926.1|
                           (BX640427) ABC transporter, ATP-binding protein [Bordetella parapertussis]
                           701
                           27.38
                           41.08
                           212
                           579.0
     

     






      

          
GC ORFID: 48514How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 70988Stop: 72745

          
Length: 1758


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGAGGCGGTCACCTCTTGGACAAGCATTCGACGCATCATCCAGCGCAGTGGCGCGCCTACCTCCGCCCTC 
ACCTTGGGATTGGCGCTGCGCGTGCTGGAACGGTGTTCCGAAGTGCTGCCCTATCTGCTGTGCTGGCTATGG 
CTTGGCGCCGTCCTGCCACTTTCTTTGCCAGGTTTTGCCTGGACAGCCACCTGGGCGGCCAGTCCGCAATGG 
CTGGCTCTGACCCTAGCTTGCCTGTTCCTCATGCAATGGGCTTTCGCCTTCGGCGGCCAGAAATGTTGCTTT 
CTGAACAGTTACCAGATCATCGAACGCTATCGACAGGGGCTGCTCGAGCGAGTCCGCAACATGCCGATCGGC 
GTGTTGAGAGGACGGCAGGTGGGGCACATGGCCGACCTGCTCACCGACGACATCAATCGTGTCGAAGCCATA 
TTTGCCCATGTCCTGGCGGATTTCGTCGCCGCCGCGGGCCTGGCGCTGACGACGATCCTGCTGCTGGCAGCT 
ATCGAGTGGCGGCTGGCCCTGGCGCTTGCTGGGCTCGCGCCCCTGGCCATGCTCGTCCTGATTGCCAGTGGG 
CGACTGTTCGAGCAGGCGGTCCAGCGCAAACACGCGCGCTTCAAGGCGACATCCGGGATGTTGGTGGAGTTC 
ATCGGCGGCCTGGCGACGTTACGCCTCTTCAATCACTCGCGCGCCTGGTCGCAGCAGTTAGACCAGGCGTTC 
ACCGAACTCAAGGCGCTCAGCCTGGGGATCGAGAAATGGGGCGGCGGTCCGGTCATGCTCTTCAGACTGATC 
GTCGAGTGTGGCCTCGTCGTCCTGTTCATTGCAGGCGGCTGGAGCATGTTCTCCCATGAATACCCCGCGCTG 
GTTTGGCTGGCGTTCATTCTGCTGTCTTACAAGTTCATTGGTCCGCTGCTGGAGTTGGCCGAATACTTGGTG 
ATGCTCCGCCATGCTTGCCAGAGCGAGATGAAGCTCGACGAGCTATGGCGCGTCCCGCTCCTGCCCGAACCC 
GCCCTGGCTAGGCGGCCGGATGGTCTGGCCGTGCAGTTCGATCGCGTGTCGTTCGCCTACGGCGATCGGCTC 
GTGCTACGCGATGTCAGCTTCGTGGTGCCGCCTGGTAGCGTCACCGCCGTGGTTGGTCCTTCCGGCGCAGGC 
AAGAGCACGCTGTTGCATCTGCTTGCGCGCTTTCATATGCCCGACAGCGGCGCGATACGCATTGGCGGCTTG 
GATCTGCGTGATATCGGCTCCGACCAGTTGTATCGCGTCGTCAGCATGGTCTTCCAGCAGGTACAACTGTTC 
GACGGCAGCATTATCGACAACGTGCGTGCAGGTCGCGAGCAGGCCAGCGACGAGGAGGTGATTCAGGCCGCC 
GAGGCGGCTCATTGTGATGAGTTCATCGCCAGGCTTGCTGATGGCTACCAGACAAAGGTCGGCGAATCGGGG 
TTCGGCCTTTCGGGAGGAGAGCGGCAGCGGCTGTCGATCGCCCGGGCACTGCTCAAGGATGCGCCGCTGCTC 
CTGCTGGATGAAGTAACCGCCTCGGTAGACCCACGCTCCCAGCACGCCATCCAGACCTCTCTCGGCCAATTG 
GCTGCGGGGCGCAGCGTCATCATGGTCGCCCACAGGCTCAACACCATCAGGCACGCCGACCAGATACTGGTT 
CTGGATCAAGGCGCCTTGGTCGAGGCTGGAACCCACCAGTCCCTGCTTGCGAGAAATGGTCTGTACGCCGCG 
ATGTGGAGGGCGCAAACATCCAACGGCTAG