ViewGene
Locus Name:
GeneID:
Location:

GeneID:5511
TrivialName: PA14_54980
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54980
PAO1 Ortholog Locus:
Sequence Length:1755
Protein Length:584
Start: 4884677
Stop: 4882923
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL12239.1| (AY049068) ABC-transporter protein [Pseudomonas aeruginosa]
Identities = 535/585 (91%), Positives = 541/585 (92%), Gaps = 1/585 (0%)
Sequence:
ATGGCAGGAGCCTTGGCTTTGACCCTTTTGGCTGTACTGGCGGAACTGGCGCCATTCGCCATCCTGTACTTC
GCTGTCGAGGCCCTACTCAGGACGCCTCAAGCCTTCGCCCAGGAACTTCTGACTCTGGCTCCCTGGCTGGTG
GGTGGCATAGTGCTGAAGTACATGGCCTATGGCGTCGCCTACCTGATCAGCCATCACGCTGCCTACGCAATC
ATGGCCAGTACGCGCAGCCGCCTGGCGGCCAAGCTCGATGATGCGCCCTTGCACTGGATACATGCACAGGGG
TCGGGCGCGCTGAAACAGTCCGTTATCCAGGATGTCGAGCGCATGGAGGCATTCATTGCCCATCACACCGTG
GAGGTCGCCGCCGCGGTATTGGCGCCACTGTGTGTCACGACAGCCTTGCTCTGGGTGGACTGGCGGCTGGCA
ATGGCGGCGCTGGCAGTCGGTCCCTTGGCCCTGCTCGCTTCAACATTCGCCATGCGCGGAGTGGGTCAAAAC
CAAGATCGGTTCAACCGGGCAACGGCCAGCCTGAACAACGTGACCGTTGAGTACCTGCGCAACATGCCGGTG
CTCAAGGTGTTCAGTCGCAGTGCCTCCGGGTTCCGGCTGCTGCGACGGCAGCTTCATGCCTACTATCGACTA
ACTGATCAGATCACTCGCAACACCGTTCCAGGGTGGGCGCTGTTCACCAGCGTCCTGGGTGCCCACCTGCTC
CTGTTGCTTCCGGTCGGCGCATGGCTTCATGCGCGTGGGGAAATCGGTGTTGCTCAAGTGGTGGTGGCAGTG
CTGCTGGGGGCTGGGATTTTTCGTCCCTTGCTAAAAGTCAGTCGCTTCATCATGGACATACCGCCGATTCTC
GCAGGCCTACGCAGGATGGCACCGATACTGGCGCTCAGTCGCAAGCGGGGGCGAGCAGATCTGCCGGTGGCT
GCCACCGTACGGGTCGACCTCGACCAGGTCTGCTTTCGCTATGGCGGACGCCACGTGCTGACCGGGGTGAGC
CTGTCCCTGGCGTCGGGCACCTTCAATGTACTCCTGGGGCCATCGGGGTCCGGTAAGTCCACCATCGCGCAA
CTGATTGCGGGCTTACTGGCGCCAGAGTCGGGGTCGGTCACGATCAACGGGAAGTCCATCGCCACCCTCAGC
GATGAGGAGCGTACCCGCTGCATAGCTCTCGCGGCCCAGGACGTGTTTCTCTTCAGCGGAACGGTGCGCGAC
AACCTGGTGCTCGCGCGCCCGCAGGCATCCGAGGCGGAGATCTGCCGGGCCGTGCGTGTGGCGCAGGCGCAG
GCGCTTATCGAGGGGCTTCCTGCCGGCTACGACACCCCGCTCAATGAACTGGGCACCCGCTTATCTGGCGGC
GAGCGCCAGCGCCTGGCGGTCGCACGGGCATTGCTTGCCGACGCGGCGGTTCTGGTGCTCGACGAATCCGCG
GCGTTCGCCGACAGCCTGACGCAACGCGCGTTCTTTCAGGCGCTGCTCGAGGAGTACCCAGAGAAAACACTG
CTTGTCGTTGCACACAGGCTGCATGGAATCGAGCAAGCCGACCAGATACTAGTGCTTGAGGAAGGTGCATTG
TCCTTGTGCGGACGCCATGACCAACTCATGAGCGAGAGCGATTACTACCGGTCCATGTGGATGCATGAGGAG
TTCGCCGAGCGCTGGAGCTTGCGCGGCGCTGCGCCGTCCCAAGACAGGACGCAAGAGTCGGCAGCATTGCCG
GCGACATCTACCGCAGGGGGAGATTGA
Translation:
MAGALALTLLAVLAELAPFAILYFAVEALLRTPQAFAQELLTLAPWLVGGIVLKYMAYGVAYLISHHAAYAI
MASTRSRLAAKLDDAPLHWIHAQGSGALKQSVIQDVERMEAFIAHHTVEVAAAVLAPLCVTTALLWVDWRLA
MAALAVGPLALLASTFAMRGVGQNQDRFNRATASLNNVTVEYLRNMPVLKVFSRSASGFRLLRRQLHAYYRL
TDQITRNTVPGWALFTSVLGAHLLLLLPVGAWLHARGEIGVAQVVVAVLLGAGIFRPLLKVSRFIMDIPPIL
AGLRRMAPILALSRKRGRADLPVAATVRVDLDQVCFRYGGRHVLTGVSLSLASGTFNVLLGPSGSGKSTIAQ
LIAGLLAPESGSVTINGKSIATLSDEERTRCIALAAQDVFLFSGTVRDNLVLARPQASEAEICRAVRVAQAQ
ALIEGLPAGYDTPLNELGTRLSGGERQRLAVARALLADAAVLVLDESAAFADSLTQRAFFQALLEEYPEKTL
LVVAHRLHGIEQADQILVLEEGALSLCGRHDQLMSESDYYRSMWMHEEFAERWSLRGAAPSQDRTQESAALP
ATSTAGGD*
AnnotationID:5513GeneID:5511
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 17:05:04
Gene Name:
Confidence Code:3
GeneProduct:poossible ABC-type transporter protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1132, COG2274, COG4988
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48765324|ref|ZP_00269875.1|  COG1132: ABC-type multidrug transport system, ATPase and permease 
components [Rhodospirillum rubrum]
     Length=607
     Score =  502 bits (1293),  Expect = 1e-140
     Identities = 264/567 (46%), Positives = 365/567 (64%), Gaps = 8/567 (1%)

gi|17546527|ref|NP_519929.1|  PROBABLE COMPOSITE ATP-BINDING TRANSMEMBRANE ABC TRANSPORTER 
 PROTEIN [Ralstonia solanacearum GMI1000]
     Length=618
     Score =  363 bits (932),  Expect = 9e-99
     Identities = 216/566 (38%), Positives = 326/566 (57%), Gaps = 15/566 (2%)

gi|35210883|dbj|BAC88263.1|  HlyB/MsbA family ABC transporter [Gloeobacter violaceus PCC 7421]
     Length=615
     Score =  346 bits (888),  Expect = 1e-93      
     Identities = 207/566 (36%), Positives = 317/566 (56%), Gaps = 8/566 (1%)

gi|71558155|gb|AAZ37366.1|  ABC transporter, ATP-binding/permease protein [Pseudomonas syringae 
pv. phaseolicola 1448A]
     Length=593
     Score =  327 bits (838),  Expect = 7e-88
     Identities = 192/563 (34%), Positives = 298/563 (52%), Gaps = 2/563 (0%)

gi|28853039|gb|AAO56108.1|  ABC transporter, ATP-binding/permease protein [Pseudomonas syringae 
pv. tomato str. DC3000]
     Length=593
     Score =  319 bits (817),  Expect = 2e-85
     Identities = 185/563 (32%), Positives = 297/563 (52%), Gaps = 2/563 (0%)






 
Structural Features:
COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].
             CD-Length = 567 residues,  94.0% aligned
             Score =  253 bits (646), Expect = 5e-68

COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine 
peptidase domain [Defense mechanisms].
             CD-Length = 709 residues, only  69.3% aligned
             Score =  195 bits (496), Expect = 2e-50

COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and 
permease components [Energy production and conversion / Posttranslational modification, protein 
turnover, chaperones].
             CD-Length = 559 residues,  96.1% aligned
             Score =  192 bits (489), Expect = 1e-49






   
Genomic Context:






   
Comment:
Sequence differs from that of gi|18535588|gb|AAL12239.1|
Part of a 6-gene cluster of possible ABC-type transporters (including PA14_54970, 
PA14_54980, PA14_55000, PA14_55020, PA14_55030, and PA14_55040).


















    ReferenceID:11015




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5511
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197045
                           gb|AAL12239.1|
                           (AY049068) ABC-transporter protein [Pseudomonas aeruginosa]
                           592
                           91.04
                           92.73
                           15
                           2604.0
     

     
     
197046
                           emb|CAE29432.1|
                           (BX572605) putative ABC transporter ATP-binding protein [Rhodopseudomonas palustris CGA009]
                           658
                           27.05
                           42.24
                           132
                           501.0
     

     
     
197047
                           gb|AAL52924.1|
                           (AE009607) ABC TRANSPORTER ATP-BINDING PROTEIN [Brucella melitensis 16M]
                           602
                           19.76
                           28.07
                           300
                           361.0
     

     






      

          
GC ORFID: 48513How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 69230Stop: 70984

          
Length: 1755


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCAGGAGCCTTGGCTTTGACCCTTTTGGCTGTACTGGCGGAACTGGCGCCATTCGCCATCCTGTACTTC 
GCTGTCGAGGCCCTACTCAGGACGCCTCAAGCCTTCGCCCAGGAACTTCTGACTCTGGCTCCCTGGCTGGTG 
GGTGGCATAGTGCTGAAGTACATGGCCTATGGCGTCGCCTACCTGATCAGCCATCACGCTGCCTACGCAATC 
ATGGCCAGTACGCGCAGCCGCCTGGCGGCCAAGCTCGATGATGCGCCCTTGCACTGGATACATGCACAGGGG 
TCGGGCGCGCTGAAACAGTCCGTTATCCAGGATGTCGAGCGCATGGAGGCATTCATTGCCCATCACACCGTG 
GAGGTCGCCGCCGCGGTATTGGCGCCACTGTGTGTCACGACAGCCTTGCTCTGGGTGGACTGGCGGCTGGCA 
ATGGCGGCGCTGGCAGTCGGTCCCTTGGCCCTGCTCGCTTCAACATTCGCCATGCGCGGAGTGGGTCAAAAC 
CAAGATCGGTTCAACCGGGCAACGGCCAGCCTGAACAACGTGACCGTTGAGTACCTGCGCAACATGCCGGTG 
CTCAAGGTGTTCAGTCGCAGTGCCTCCGGGTTCCGGCTGCTGCGACGGCAGCTTCATGCCTACTATCGACTA 
ACTGATCAGATCACTCGCAACACCGTTCCAGGGTGGGCGCTGTTCACCAGCGTCCTGGGTGCCCACCTGCTC 
CTGTTGCTTCCGGTCGGCGCATGGCTTCATGCGCGTGGGGAAATCGGTGTTGCTCAAGTGGTGGTGGCAGTG 
CTGCTGGGGGCTGGGATTTTTCGTCCCTTGCTAAAAGTCAGTCGCTTCATCATGGACATACCGCCGATTCTC 
GCAGGCCTACGCAGGATGGCACCGATACTGGCGCTCAGTCGCAAGCGGGGGCGAGCAGATCTGCCGGTGGCT 
GCCACCGTACGGGTCGACCTCGACCAGGTCTGCTTTCGCTATGGCGGACGCCACGTGCTGACCGGGGTGAGC 
CTGTCCCTGGCGTCGGGCACCTTCAATGTACTCCTGGGGCCATCGGGGTCCGGTAAGTCCACCATCGCGCAA 
CTGATTGCGGGCTTACTGGCGCCAGAGTCGGGGTCGGTCACGATCAACGGGAAGTCCATCGCCACCCTCAGC 
GATGAGGAGCGTACCCGCTGCATAGCTCTCGCGGCCCAGGACGTGTTTCTCTTCAGCGGAACGGTGCGCGAC 
AACCTGGTGCTCGCGCGCCCGCAGGCATCCGAGGCGGAGATCTGCCGGGCCGTGCGTGTGGCGCAGGCGCAG 
GCGCTTATCGAGGGGCTTCCTGCCGGCTACGACACCCCGCTCAATGAACTGGGCACCCGCTTATCTGGCGGC 
GAGCGCCAGCGCCTGGCGGTCGCACGGGCATTGCTTGCCGACGCGGCGGTTCTGGTGCTCGACGAATCCGCG 
GCGTTCGCCGACAGCCTGACGCAACGCGCGTTCTTTCAGGCGCTGCTCGAGGAGTACCCAGAGAAAACACTG 
CTTGTCGTTGCACACAGGCTGCATGGAATCGAGCAAGCCGACCAGATACTAGTGCTTGAGGAAGGTGCATTG 
TCCTTGTGCGGACGCCATGACCAACTCATGAGCGAGAGCGATTACTACCGGTCCATGTGGATGCATGAGGAG 
TTCGCCGAGCGCTGGAGCTTGCGCGGCGCTGCGCCGTCCCAAGACAGGACGCAAGAGTCGGCAGCATTGCCG 
GCGACATCTACCGCAGGGGGAGATTGA