ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5509

TrivialName: PA14_55000

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55000

PAO1 Ortholog Locus:

Sequence Length: 951

Protein Length: 316

Start: 4884920

Stop: 4885870

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAN05275.1| (AF416331) RC202 [Ruegeria sp. PR1b] Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 4/300 (1%)

Sequence:

ATGCGTACCGCTCGATCACTCCTGACGCTGTTCTTTGCCGTGGGGTCCGCCGCCGCACAGGCGCAGGACTAC
CCACGGACCATCGTGGATGATCGCAACCAATCCGTGGTGATCGAACGCGCGCCACGAACCGTCGCATCAATT
TCGACCTTCGGGGCTGACGTCATGGTTGCGCTCGACCGACAGGTCGCGGGGCTTTCCACGCTCAACAACCAG
CGCTCCGCCTTCTTGGGAGATGCCGCTGCCAAGGCCGTTAACCTGGGCGAAGTGCACCAGACCAACCTTGAG
GTTCTGGCGAAACTGTCGCCGGATCTGACCATCGGCTTACGCACGTATACGGAACCCTTCGCCAAGAAGATC
GAGGAGACTGGGGCGTTCCTGGCATTCGACCTGATCACGTTGAATGATTCTGTGAGTGCAGTGGAGCGAGCC
ACACGAGCGCTCGGTGCGGACAGCCAGGGCGCGGCTATGAACCAGGCTTTCCTGGACGAGCTGGAGGCGACC
GGCAAACGCGCGCCGGGAAAGGTCAGCGCGGTTTTCCTCTGGCATTGGGGCAATGCTCCCTATGCCTACTAC
AGCAACCACCTGACGACTCAGGTGATGGAGCGCCTGGGAGCAACCAACGTCCAGGGCGAACCGCCCAAGGGC
ATGGAATCTGCCGATTCGTCCGTGATAACCATGGAGACCCTGCTGCGGCTGAATCCGGATGTGATCATCTCG
TTCAAGGGTGATGCCGGACCGTTCACCAAGCACCCGGCTTGGAATCGCCTCAAGGCGGTCCAGTCCGGCCGG
GCCTGGCGGGTCTCAGACCAGTACATCATGTCGCATGGCCCCATAGCGCGACGGCAGGTGCTGCACGAAATG
GCGCATCTGCTCTACCCGGGGGTGTTCCCCGAGCCCACGGGCATTCCGGCTGCGGCCCGCGCCAAGCCCATG
GATTTCGAGCGCTGA

Translation:

MRTARSLLTLFFAVGSAAAQAQDYPRTIVDDRNQSVVIERAPRTVASISTFGADVMVALDRQVAGLSTLNNQ
RSAFLGDAAAKAVNLGEVHQTNLEVLAKLSPDLTIGLRTYTEPFAKKIEETGAFLAFDLITLNDSVSAVERA
TRALGADSQGAAMNQAFLDELEATGKRAPGKVSAVFLWHWGNAPYAYYSNHLTTQVMERLGATNVQGEPPKG
MESADSSVITMETLLRLNPDVIISFKGDAGPFTKHPAWNRLKAVQSGRAWRVSDQYIMSHGPIARRQVLHEM
AHLLYPGVFPEPTGIPAAARAKPMDFER*

AnnotationID:5511 GeneID:5509

AnnotatorUID: danlee

Modification Date/Time: 2005-10-03 17:05:46

Gene Name:

Confidence Code: 3

GeneProduct: possible ABC-type transporter, periplasmic component

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0614, cd01142, cd01146

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|28558929|ref|NP_788189.1|  putative ferrichrome ABC transporter ferrichrome-binding 
protein [Ruegeria sp. PR1b]
     Length=321
     Score =  152 bits (385),  Expect = 1e-35
     Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 4/300 (1%)

Structural Features:

COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component 
[Inorganic ion transport and metabolism].
             CD-Length = 319 residues,  96.6% aligned
             Score =  121 bits (305), Expect = 9e-29

cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function 
as initial receptors in the ABC metal ion uptake in eubacteria and archaea.
             CD-Length = 289 residues,  99.0% aligned
             Score =  100 bits (251), Expect = 2e-22

cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function 
as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. 
             CD-Length = 256 residues,  98.8% aligned
             Score = 90.8 bits (225), Expect = 2e-19

Genomic Context:

Comment:

Part of a 6-gene cluster of possible ABC-type transporters (including PA14_54970, 
PA14_54980, PA14_55000, PA14_55020, PA14_55030, and PA14_55040).

ReferenceID:11012

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28155