Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAF12555.1| AE001826_24 (AE001826) iron ABC transporter, permease protein [Deinococcus radiodurans]
Identities = 122/323 (37%), Positives = 180/323 (55%), Gaps = 9/323 (2%).
Similarity to a number of (known or putative) iron ABC transporter, permease proteins from various systems.
Sequence:
ATGGACGAGTGCGCAATTGATGCGCGGTCCCGCCTCTCTTCTCGGTTGCGGTCGCTCTGGATCGCTGGCCTC
AGCCTGTTGGCCATCGGCGCGATAGTGGTCGGGACCTTGGCACTGGGTGACTTCGGGATTCCGTTTGGCCGG
GTGTTGCAGGTTCTCGTCCAAGACGACGGCTCCGACGCAGCCTTCGTGATCCACGAGATTCGCCTCCCCCGG
CTGTTGACCGCGACACTGGTTGGGGCCGCCCTGGGACTGGCCGGAGCCATCGTGCAGGCGATCACCCGCAAC
CCCCTGGGCGAGCCCGGGCTGCTCGGCGTCACCGCCGGAGCTGCGTTTGCCATGGCCCTGTGCATGACCTAC
CTCAGTCTGCCCACGTCCGCCGAACTCGCTGCGAGCACCGTCGGTGGAATCGCCGCGGCGACACTCACGCTT
GCCATCGGTATGGGAGCCCGGCTGGATCCGTTGTACCTGACGCTGACCGGCATGAGCATCAACCTGTTCTTT
GCCGCTGCCATCATCGTGATGCTGGTGTCCGCGAACGTAGAGGTCAACGGTATCTATTACTGGCTGACCGGC
AGCCTGATCAACCGGACCTGGGAGCATGTCGCGATGCTCTGGCCATGGGTCGTGTCAGGTTTAGTCTTGGGT
CTTGCGTGCGCTGGGCGACTGGACACGATGATCCTCGACGAAGATGTGCTCACTGCGCTGGGCATGCGCGTG
ACAGCTTGGCGCCTTTTGTTCGGCCTCGTGGTGGTGCTGCTCTCAGCTTCGGCCGTGGCTGCCGCGGGTCCA
ATCACCTTCATTGGCCTGGTCGCACCACACATCGTCCGCTTCGGTCTGGGTTCCAGGGGTATTCGCCACCGG
ACCTTGCTACCGCTCTCGGCATTGGTGGGCGCCGGCCTGGTGTGCGCTGCTGATTTTGCCGCCAAATGGCAG
GAGGTGCCGGCCGGCATCCTATGCGTACTTCTGGGTGGCCCAGTGCTGGTCTATCTGGTCGGCCGGAGGGAG
ACCTCCGATGCGTAG
Translation:
MDECAIDARSRLSSRLRSLWIAGLSLLAIGAIVVGTLALGDFGIPFGRVLQVLVQDDGSDAAFVIHEIRLPR
LLTATLVGAALGLAGAIVQAITRNPLGEPGLLGVTAGAAFAMALCMTYLSLPTSAELAASTVGGIAAATLTL
AIGMGARLDPLYLTLTGMSINLFFAAAIIVMLVSANVEVNGIYYWLTGSLINRTWEHVAMLWPWVVSGLVLG
LACAGRLDTMILDEDVLTALGMRVTAWRLLFGLVVVLLSASAVAAAGPITFIGLVAPHIVRFGLGSRGIRHR
TLLPLSALVGAGLVCAADFAAKWQEVPAGILCVLLGGPVLVYLVGRRETSDA*
AnnotationID:5509 GeneID:5507
Modification Date/Time:
2005-10-03 17:05:24
GeneProduct: possible ABC-type transporter, permease component
Cell Localization Confidence Code: 5
Functional Category: (27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: gi|56381277| dbj|BAD77185.1| ferrichrome ABC transporter (permease) [Geobacillus kaustophilus HTA426]
Length=332
Score = 214 bits (544), Expect = 4e-54
Identities = 117/329 (35%), Positives = 195/329 (59%), Gaps = 17/329 (5%)
gi|6460851| gb|AAF12555.1| AE001826_24 iron ABC transporter, permease protein [Deinococcus radiodurans]
gi|7473073| pir||F75631 iron ABC transporter, permease protein - Deinococcus radiodurans (strain R1)
Length=324
Score = 205 bits (522), Expect = 2e-51
Identities = 122/323 (37%), Positives = 180/323 (55%), Gaps = 9/323 (2%)
Structural Features: pfam01032 , FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent
transport systems family.
CD-Length = 301 residues, 92.7% aligned
Score = 147 bits (374), Expect = 1e-36
COG0609 , FepD, ABC-type Fe3+-siderophore transport system, permease component
[Inorganic ion transport and metabolism].
CD-Length = 334 residues, 88.3% aligned
Score = 132 bits (334), Expect = 5e-32
COG4779 , FepG, ABC-type enterobactin transport system, permease component
[Inorganic ion transport and metabolism].
CD-Length = 346 residues, 83.8% aligned
Score = 100 bits (251), Expect = 2e-22
Comment: Part of a 6-gene cluster of possible ABC-type transporters (including PA14_54970,
PA14_54980, PA14_55000, PA14_55020, PA14_55030, and PA14_55040).
GC ORFID: 48509 How Found: Glimmer
GC_TrimmedSeqID: 69 Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 68030 Stop: 67008
Length: 1023
Start Codon: ATG Truncated Start:
Stop Codon: TAG Truncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGACGAGTGCGCAATTGATGCGCGGTCCCGCCTCTCTTCTCGGTTGCGGTCGCTCTGGATCGCTGGCCTC AGCCTGTTGGCCATCGGCGCGATAGTGGTCGGGACCTTGGCACTGGGTGACTTCGGGATTCCGTTTGGCCGG GTGTTGCAGGTTCTCGTCCAAGACGACGGCTCCGACGCAGCCTTCGTGATCCACGAGATTCGCCTCCCCCGG CTGTTGACCGCGACACTGGTTGGGGCCGCCCTGGGACTGGCCGGAGCCATCGTGCAGGCGATCACCCGCAAC CCCCTGGGCGAGCCCGGGCTGCTCGGCGTCACCGCCGGAGCTGCGTTTGCCATGGCCCTGTGCATGACCTAC CTCAGTCTGCCCACGTCCGCCGAACTCGCTGCGAGCACCGTCGGTGGAATCGCCGCGGCGACACTCACGCTT GCCATCGGTATGGGAGCCCGGCTGGATCCGTTGTACCTGACGCTGACCGGCATGAGCATCAACCTGTTCTTT GCCGCTGCCATCATCGTGATGCTGGTGTCCGCGAACGTAGAGGTCAACGGTATCTATTACTGGCTGACCGGC AGCCTGATCAACCGGACCTGGGAGCATGTCGCGATGCTCTGGCCATGGGTCGTGTCAGGTTTAGTCTTGGGT CTTGCGTGCGCTGGGCGACTGGACACGATGATCCTCGACGAAGATGTGCTCACTGCGCTGGGCATGCGCGTG ACAGCTTGGCGCCTTTTGTTCGGCCTCGTGGTGGTGCTGCTCTCAGCTTCGGCCGTGGCTGCCGCGGGTCCA ATCACCTTCATTGGCCTGGTCGCACCACACATCGTCCGCTTCGGTCTGGGTTCCAGGGGTATTCGCCACCGG ACCTTGCTACCGCTCTCGGCATTGGTGGGCGCCGGCCTGGTGTGCGCTGCTGATTTTGCCGCCAAATGGCAG GAGGTGCCGGCCGGCATCCTATGCGTACTTCTGGGTGGCCCAGTGCTGGTCTATCTGGTCGGCCGGAGGGAG ACCTCCGATGCGTAG