ViewGene

Locus Name:
GeneID:
Location:

GeneID:5507
TrivialName: PA14_55020
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55020
PAO1 Ortholog Locus:
Sequence Length:1023
Protein Length:340
Start: 4885877
Stop: 4886899
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAF12555.1|AE001826_24 (AE001826) iron ABC transporter, permease protein [Deinococcus radiodurans]
Identities = 122/323 (37%), Positives = 180/323 (55%), Gaps = 9/323 (2%). Similarity to a number of (known or putative) iron ABC transporter, permease proteins from various systems.
Sequence:
ATGGACGAGTGCGCAATTGATGCGCGGTCCCGCCTCTCTTCTCGGTTGCGGTCGCTCTGGATCGCTGGCCTC
AGCCTGTTGGCCATCGGCGCGATAGTGGTCGGGACCTTGGCACTGGGTGACTTCGGGATTCCGTTTGGCCGG
GTGTTGCAGGTTCTCGTCCAAGACGACGGCTCCGACGCAGCCTTCGTGATCCACGAGATTCGCCTCCCCCGG
CTGTTGACCGCGACACTGGTTGGGGCCGCCCTGGGACTGGCCGGAGCCATCGTGCAGGCGATCACCCGCAAC
CCCCTGGGCGAGCCCGGGCTGCTCGGCGTCACCGCCGGAGCTGCGTTTGCCATGGCCCTGTGCATGACCTAC
CTCAGTCTGCCCACGTCCGCCGAACTCGCTGCGAGCACCGTCGGTGGAATCGCCGCGGCGACACTCACGCTT
GCCATCGGTATGGGAGCCCGGCTGGATCCGTTGTACCTGACGCTGACCGGCATGAGCATCAACCTGTTCTTT
GCCGCTGCCATCATCGTGATGCTGGTGTCCGCGAACGTAGAGGTCAACGGTATCTATTACTGGCTGACCGGC
AGCCTGATCAACCGGACCTGGGAGCATGTCGCGATGCTCTGGCCATGGGTCGTGTCAGGTTTAGTCTTGGGT
CTTGCGTGCGCTGGGCGACTGGACACGATGATCCTCGACGAAGATGTGCTCACTGCGCTGGGCATGCGCGTG
ACAGCTTGGCGCCTTTTGTTCGGCCTCGTGGTGGTGCTGCTCTCAGCTTCGGCCGTGGCTGCCGCGGGTCCA
ATCACCTTCATTGGCCTGGTCGCACCACACATCGTCCGCTTCGGTCTGGGTTCCAGGGGTATTCGCCACCGG
ACCTTGCTACCGCTCTCGGCATTGGTGGGCGCCGGCCTGGTGTGCGCTGCTGATTTTGCCGCCAAATGGCAG
GAGGTGCCGGCCGGCATCCTATGCGTACTTCTGGGTGGCCCAGTGCTGGTCTATCTGGTCGGCCGGAGGGAG
ACCTCCGATGCGTAG
Translation:
MDECAIDARSRLSSRLRSLWIAGLSLLAIGAIVVGTLALGDFGIPFGRVLQVLVQDDGSDAAFVIHEIRLPR
LLTATLVGAALGLAGAIVQAITRNPLGEPGLLGVTAGAAFAMALCMTYLSLPTSAELAASTVGGIAAATLTL
AIGMGARLDPLYLTLTGMSINLFFAAAIIVMLVSANVEVNGIYYWLTGSLINRTWEHVAMLWPWVVSGLVLG
LACAGRLDTMILDEDVLTALGMRVTAWRLLFGLVVVLLSASAVAAAGPITFIGLVAPHIVRFGLGSRGIRHR
TLLPLSALVGAGLVCAADFAAKWQEVPAGILCVLLGGPVLVYLVGRRETSDA*
AnnotationID:5509GeneID:5507
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 17:05:24
Gene Name:
Confidence Code:3
GeneProduct:possible ABC-type transporter, permease component
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01032, COG0609
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|56381277|dbj|BAD77185.1|  ferrichrome ABC transporter (permease) [Geobacillus kaustophilus  HTA426]
     Length=332
     Score =  214 bits (544),  Expect = 4e-54
     Identities = 117/329 (35%), Positives = 195/329 (59%), Gaps = 17/329 (5%)

gi|6460851|gb|AAF12555.1|AE001826_24  iron ABC transporter, permease protein [Deinococcus radiodurans]
gi|7473073|pir||F75631  iron ABC transporter, permease protein - Deinococcus radiodurans (strain R1)
     Length=324
     Score =  205 bits (522),  Expect = 2e-51
     Identities = 122/323 (37%), Positives = 180/323 (55%), Gaps = 9/323 (2%)
Structural Features:
pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent 
transport systems family.
             CD-Length = 301 residues,  92.7% aligned
             Score =  147 bits (374), Expect = 1e-36

COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component 
[Inorganic ion transport and metabolism].
             CD-Length = 334 residues,  88.3% aligned
             Score =  132 bits (334), Expect = 5e-32

COG4779, FepG, ABC-type enterobactin transport system, permease component 
[Inorganic ion transport and metabolism].
             CD-Length = 346 residues,  83.8% aligned
             Score =  100 bits (251), Expect = 2e-22
Genomic Context:
Comment:
Part of a 6-gene cluster of possible ABC-type transporters (including PA14_54970, 
PA14_54980, PA14_55000, PA14_55020, PA14_55030, and PA14_55040).
ReferenceID:11009
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28152
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48509How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 68030Stop: 67008
Length: 1023
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGACGAGTGCGCAATTGATGCGCGGTCCCGCCTCTCTTCTCGGTTGCGGTCGCTCTGGATCGCTGGCCTC
AGCCTGTTGGCCATCGGCGCGATAGTGGTCGGGACCTTGGCACTGGGTGACTTCGGGATTCCGTTTGGCCGG
GTGTTGCAGGTTCTCGTCCAAGACGACGGCTCCGACGCAGCCTTCGTGATCCACGAGATTCGCCTCCCCCGG
CTGTTGACCGCGACACTGGTTGGGGCCGCCCTGGGACTGGCCGGAGCCATCGTGCAGGCGATCACCCGCAAC
CCCCTGGGCGAGCCCGGGCTGCTCGGCGTCACCGCCGGAGCTGCGTTTGCCATGGCCCTGTGCATGACCTAC
CTCAGTCTGCCCACGTCCGCCGAACTCGCTGCGAGCACCGTCGGTGGAATCGCCGCGGCGACACTCACGCTT
GCCATCGGTATGGGAGCCCGGCTGGATCCGTTGTACCTGACGCTGACCGGCATGAGCATCAACCTGTTCTTT
GCCGCTGCCATCATCGTGATGCTGGTGTCCGCGAACGTAGAGGTCAACGGTATCTATTACTGGCTGACCGGC
AGCCTGATCAACCGGACCTGGGAGCATGTCGCGATGCTCTGGCCATGGGTCGTGTCAGGTTTAGTCTTGGGT
CTTGCGTGCGCTGGGCGACTGGACACGATGATCCTCGACGAAGATGTGCTCACTGCGCTGGGCATGCGCGTG
ACAGCTTGGCGCCTTTTGTTCGGCCTCGTGGTGGTGCTGCTCTCAGCTTCGGCCGTGGCTGCCGCGGGTCCA
ATCACCTTCATTGGCCTGGTCGCACCACACATCGTCCGCTTCGGTCTGGGTTCCAGGGGTATTCGCCACCGG
ACCTTGCTACCGCTCTCGGCATTGGTGGGCGCCGGCCTGGTGTGCGCTGCTGATTTTGCCGCCAAATGGCAG
GAGGTGCCGGCCGGCATCCTATGCGTACTTCTGGGTGGCCCAGTGCTGGTCTATCTGGTCGGCCGGAGGGAG
ACCTCCGATGCGTAG