ViewGene

Locus Name:
GeneID:
Location:

GeneID:5506
TrivialName: PA14_55030
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55030
PAO1 Ortholog Locus:
Sequence Length:1065
Protein Length:354
Start: 4886892
Stop: 4887956
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB74284.1| (AP003590) iron(III) dicitrate transport system permease protein [Nostoc sp. PCC 7120]
Identities = 132/353 (37%), Positives = 198/353 (56%), Gaps = 17/353 (4%). Similarity to a number of (known or putative) iron ABC transporter, permease proteins from various systems
Sequence:
ATGCGTAGTCCGACGCACCAGGTGGCGATGCGCTCAGGAGGCCGATATGCGGCAGTGCTGGCACTCTTGTGC
ACGGCATTGGCATTACTGGTGCTGGCTTCACTGTTCTGGGGCGCCGTACCGCTTGCTGCGGGCGATGTCCTG
GACGGGCTTCTCTCGCGGCATGCTCCTTCGCTGGAAAGCGCGCTCGTCTGGCAACTGCGGCTACCGCGGACT
GTGCTGGCGGTGCTGGTCGGACTGCAGCTCGCCACCGCCGGCCTCATCCTGCAGACCGTCATCCGCAACCCG
CTAGCCGACCCAGGTGTCGTCGGCATATCCAGTGGTGCCGGGCTGGCCGTCGTCGCCTTGTTGCTGGTGACG
GACTTAGCCAAGGCCGACTCGCTGATCGGCACCAATCATGCGTCGATGATGGTCTGGCTGCCAGTGGTCGCT
CTATTCGGAGGGTTGGTCGCTGCGGGCCTCGTTCTGAGCATGTCCTGGCGTTCAAAACTCTGCCCGCTTCGC
CTCACGCTCAATGGCGTCGCCGTGGGCGCCGTGCTCAATGCGCTGGTGATGTGGACCATCGTCGTCTGGGGC
GGCGCACGCACCGAGATCGCGCTGATTTGGCTGGCCGGCAGTCTGTATGGTCGCGACTTCCTGCATGTGCAC
GTTCTCTGGCCATGGTGCCTGGTCGGCATCGTGGCCACCTTGGCGTTGTTGCGGCCATTGTCCCTGCTGCGC
CTGGACGACGGGGTCTCGGCGAGCTTGGGCATACGTGGAATTCGCTGGCGCACTGCGGCCATCGTCGTGGCT
GTCGTATTGGCCGCCAGCGCGGTGGCGGTGACGGGGCCCGTCGGCTTCGTCGGCTTGGTCACCCCGCACCTG
TCCCGCCTGATCGCCGGACCGAATGAGCGCCGCCTCTTCGTCGTCAACATGCTGGTCGGCAGCCTCCTGATG
CTCGGTGCTGACTGCCTCGCACGATCCCTGATCAGCCCACTGGAAATTCCCGCCGGTGCGCTGACCACCCTG
ATTGGCATTCCGGCCTTCCTCTTGCTGCTGCACCGTCAAAGGAGGCATCGCGTATGA
Translation:
MRSPTHQVAMRSGGRYAAVLALLCTALALLVLASLFWGAVPLAAGDVLDGLLSRHAPSLESALVWQLRLPRT
VLAVLVGLQLATAGLILQTVIRNPLADPGVVGISSGAGLAVVALLLVTDLAKADSLIGTNHASMMVWLPVVA
LFGGLVAAGLVLSMSWRSKLCPLRLTLNGVAVGAVLNALVMWTIVVWGGARTEIALIWLAGSLYGRDFLHVH
VLWPWCLVGIVATLALLRPLSLLRLDDGVSASLGIRGIRWRTAAIVVAVVLAASAVAVTGPVGFVGLVTPHL
SRLIAGPNERRLFVVNMLVGSLLMLGADCLARSLISPLEIPAGALTTLIGIPAFLLLLHRQRRHRV*
AnnotationID:2GeneID:5506
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 17:05:13
Gene Name:
Confidence Code:3
GeneProduct:possible ABC-type transporter, permease component
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01032, COG0609
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|67779813|gb|EAM39430.1|  transport system permease protein [Polaromonas sp. JS666]
     Length=329
     Score =  232 bits (592),  Expect = 1e-59
     Identities = 152/345 (44%), Positives = 206/345 (59%), Gaps = 21/345 (6%)

gi|56381276|dbj|BAD77184.1|  ferrichrome ABC transporter (permease) [Geobacillus kaustophilus HTA426]
     Length=326
     Score =  223 bits (567),  Expect = 1e-56
     Identities = 129/337 (38%), Positives = 199/337 (59%), Gaps = 16/337 (4%)

Structural Features:
pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent 
transport systems family. This Pfam entry contains the inner components of this multicomponent transport system..
             CD-Length = 301 residues,  98.0% aligned
             Score =  135 bits (341), Expect = 9e-33

COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic 
ion transport and metabolism].
             CD-Length = 334 residues,  85.3% aligned
             Score =  126 bits (317), Expect = 5e-30
Genomic Context:
Comment:
Part of a 6-gene cluster of possible ABC-type transporters (including PA14_54970, 
PA14_54980, PA14_55000, PA14_55020, PA14_55030, and PA14_55040).
ReferenceID:11007
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28150
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5506

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
197043 gb|AAF12554.1|AE001826_23 (AE001826) iron ABC transporter, permease protein [Deinococcus radiodurans] [Deinococcus radiodurans R1] 376 39.89 50.53 47 547.0
197041 emb|CAB12579.1| (Z99108) yfmE [Bacillus subtilis subsp. subtilis str. 168] 359 37.88 56.54 31 552.0
197042 dbj|BAA22319.1| (D86417) YfmE [Bacillus subtilis] 359 37.88 56.54 31 552.0
197044 gb|AAG20604.1| (AE005130) ferrichrome ABC transporter permease; FhuG [Halobacterium sp. NRC-1] 393 35.87 49.61 59 479.0
GC ORFID: 48508How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 67015Stop: 65951
Length: 1065
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGTAGTCCGACGCACCAGGTGGCGATGCGCTCAGGAGGCCGATATGCGGCAGTGCTGGCACTCTTGTGC
ACGGCATTGGCATTACTGGTGCTGGCTTCACTGTTCTGGGGCGCCGTACCGCTTGCTGCGGGCGATGTCCTG
GACGGGCTTCTCTCGCGGCATGCTCCTTCGCTGGAAAGCGCGCTCGTCTGGCAACTGCGGCTACCGCGGACT
GTGCTGGCGGTGCTGGTCGGACTGCAGCTCGCCACCGCCGGCCTCATCCTGCAGACCGTCATCCGCAACCCG
CTAGCCGACCCAGGTGTCGTCGGCATATCCAGTGGTGCCGGGCTGGCCGTCGTCGCCTTGTTGCTGGTGACG
GACTTAGCCAAGGCCGACTCGCTGATCGGCACCAATCATGCGTCGATGATGGTCTGGCTGCCAGTGGTCGCT
CTATTCGGAGGGTTGGTCGCTGCGGGCCTCGTTCTGAGCATGTCCTGGCGTTCAAAACTCTGCCCGCTTCGC
CTCACGCTCAATGGCGTCGCCGTGGGCGCCGTGCTCAATGCGCTGGTGATGTGGACCATCGTCGTCTGGGGC
GGCGCACGCACCGAGATCGCGCTGATTTGGCTGGCCGGCAGTCTGTATGGTCGCGACTTCCTGCATGTGCAC
GTTCTCTGGCCATGGTGCCTGGTCGGCATCGTGGCCACCTTGGCGTTGTTGCGGCCATTGTCCCTGCTGCGC
CTGGACGACGGGGTCTCGGCGAGCTTGGGCATACGTGGAATTCGCTGGCGCACTGCGGCCATCGTCGTGGCT
GTCGTATTGGCCGCCAGCGCGGTGGCGGTGACGGGGCCCGTCGGCTTCGTCGGCTTGGTCACCCCGCACCTG
TCCCGCCTGATCGCCGGACCGAATGAGCGCCGCCTCTTCGTCGTCAACATGCTGGTCGGCAGCCTCCTGATG
CTCGGTGCTGACTGCCTCGCACGATCCCTGATCAGCCCACTGGAAATTCCCGCCGGTGCGCTGACCACCCTG
ATTGGCATTCCGGCCTTCCTCTTGCTGCTGCACCGTCAAAGGAGGCATCGCGTATGA