ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5505

TrivialName: PA14_55050

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55050

PAO1 Ortholog Locus:

Sequence Length: 2055

Protein Length: 684

Start: 4888957

Stop: 4891011

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM38045.1| (AE011965) TonB-dependent receptor [Xanthomonas axonopodis pv. citri str. 306] Identities = 178/627 (28%), Positives = 283/627 (45%), Gaps = 57/627 (9%)

Sequence:

ATGAACGTCACCGCTCGGCGTACCGAAGAGCACGCCAAGGACTTGCCCTTCAGCGTGAACGTCATCTCCGGC
GAAGAAGCAGAGGAGCGGCGTCTGTACAGTCTGGAGGACGCCCTGCGCCAGACGCCGGGAGTCGACGTGATT
ACCAACATGGGGATAGCCAACACGACGCTGCGAATGCGCGGCGTCGGTGCTCTGCAGAAGATCAGCGGGGAC
GACACGTCCGTGGTGATCAATGTCGACGGTATGCCGATGTCCGCCTCCAATGCCACGTTGGATATCCTGGAC
GTGGAGCGGGTGGAAGTGCTGAAAGGCCCCCAGGGCACCCTGTTCGGACGCAATGCCGAGGCCGGAGCGGTC
AACGTGGTGACGCGCAAACCTACACGATTCTTTGAGGGCAGCCTGCGCGGCGAACTCGGCCAGGACAACCAG
CGGCTGCTGGAAGGCATGCTCAGTGGACCTCTGTCCGACACTGTTTCGGCACGGTTGGCGATCCGCGGGTCG
GGACTCGACAACTACATCGAAAGCAGCCAAACCGGCAAGCCGTTGAACAAGCCTAGAGATTTCAGTGGAAGA
GCGAGCCTGCGTTGGGACATCGGCCCGGACTCCGCGCTCAATCTCAGCGCGGGACGTGAAGTGCTGAAACAT
CGCGACTGGGTCTATCTCCTGTATCCCTATGGTGATCCGCCCAAGAGCGATATTCCGTCGAACAGCGAGCGC
AACCGCCGCGAGGTCGACCGCTATAGCGCCGAGTTCACCCATCAGTTCGACAACTCTCTCTTCACGGCCCTG
ACCGGTTTTGCTCGGACCCACCATCGCAGCACCACGCCCATCTACGAGGGACGTACCTATACGCAGCTGATC
GGGTTCCGCCCCGACGCCACCTGGAACAGCCTAGTGCGCGAACGCATCTTCAACCATGAACTGCGCCTGAGC
TCACTACCGGAAGCAGAGACGTTCTGGGTGGCCGGCGCCAATCTCTATCGGTCGGATCGGGACATGGACCGA
TTCGACTCCTACGACACCTTCTTCCTGGAAAACCCCGCCGCCTCCAGCGCCAACCGGGACTTCAGCTCCAGA
GCGCATGCGCTGTTCGCAGAGGCCACCTTCCCGGTGGCCCCGGCGACAAAGCTCACCCTCGGCGGGCGTTAC
ACCTGGGAAAAGAAGCGCTACGACGCCCACTGGTGGGCAAATCCGGAAAATCCCAGCCCTATTCGTGAGGCC
AGGGACGCCCAATCGCTTTCCGACAGCTATGCAACGGGCCGGGTGGCGCTGAGCCATGCTTTGACCCCGCAG
CTGAACCTCTACGGTGTTTACGCCCGAGGGTACAAGTCCGGAGGTTTCGACGAGGAAGGCATCGGCTTCACC
TCTGGCGGGCAGGATGCGCCCTACAAGCCAGGCTCGGTGAACAGCTACGAAACGGGTCTCAAATTTGAAAGC
GAGGATCGGCGGCTGACCTTCAACTTGGCGATGTTCCTCAACCAGGTCAAGAACGACCACCTGCTGATGTTC
GATCCGCAAACCATGGCGACCCGCAAGAGCAACCGGAATGTGACCAGCCAAGGGCTGGAGGCTGACTGGAGT
TGGATGATCAACAGCCACTGGAGCGTCAGCGGCGGTCTTGCCTATACCCGCGCCAAGATCAGAGGCGGCGGT
GATGCTTCGGGTGCTGACGGTGTTGCGTCAGGAAACGACGTGCCCGAAGTGCCTCGCTGGGAAGGGGTCCTT
TCCATCGCTTATCAGAAGCCCCTAGGTTCGATGTTCGGGCTCTCCTCGCCGCACTTGCATGCGCGACTGACC
AACCGCTACGTGGGTAGCCGCGCCGCGACGCCCCAGAACAACTTTGACCTGGCGTCATACAACAAGCTGGAT
TTCAGGGTTGGCATACGCAATGGCGGTACCGAACTCTATGTCTGGGCAGATAATCTGCTCGACAAGCAGTAT
GACCTGTACGGCTACCATATCCCGGCGTACATGCCGGGTGGGGCGGACGCCAGGATTGGTGCGCCCGGCCGT
GAGCGGACGCTGGGCGTTGGCATGACCATCCAGTTCTGA

Translation:

MNVTARRTEEHAKDLPFSVNVISGEEAEERRLYSLEDALRQTPGVDVITNMGIANTTLRMRGVGALQKISGD
DTSVVINVDGMPMSASNATLDILDVERVEVLKGPQGTLFGRNAEAGAVNVVTRKPTRFFEGSLRGELGQDNQ
RLLEGMLSGPLSDTVSARLAIRGSGLDNYIESSQTGKPLNKPRDFSGRASLRWDIGPDSALNLSAGREVLKH
RDWVYLLYPYGDPPKSDIPSNSERNRREVDRYSAEFTHQFDNSLFTALTGFARTHHRSTTPIYEGRTYTQLI
GFRPDATWNSLVRERIFNHELRLSSLPEAETFWVAGANLYRSDRDMDRFDSYDTFFLENPAASSANRDFSSR
AHALFAEATFPVAPATKLTLGGRYTWEKKRYDAHWWANPENPSPIREARDAQSLSDSYATGRVALSHALTPQ
LNLYGVYARGYKSGGFDEEGIGFTSGGQDAPYKPGSVNSYETGLKFESEDRRLTFNLAMFLNQVKNDHLLMF
DPQTMATRKSNRNVTSQGLEADWSWMINSHWSVSGGLAYTRAKIRGGGDASGADGVASGNDVPEVPRWEGVL
SIAYQKPLGSMFGLSSPHLHARLTNRYVGSRAATPQNNFDLASYNKLDFRVGIRNGGTELYVWADNLLDKQY
DLYGYHIPAYMPGGADARIGAPGRERTLGVGMTIQF*

AnnotationID:1 GeneID:5505

AnnotatorUID: danlee

Modification Date/Time: 2005-10-03 18:06:18

Gene Name:

Confidence Code: 3

GeneProduct: possible TonB-dependent receptor

Cell Localization: (6) Outer membrane protein

Synonyms:

Cell Localization Confidence Code: 3

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: cd01347, pfam00593, COG1629

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|48763242|ref|ZP_00267798.1|  COG1629: Outer membrane receptor proteins, mostly Fe 
transport [Rhodospirillum rubrum]
     Length=712
     Score =  485 bits (1249),  Expect = 2e-135
     Identities = 271/685 (39%), Positives = 409/685 (59%), Gaps = 20/685 (2%)

gi|69152719|gb|EAN65869.1|  TonB-dependent receptor [Paracoccus denitrificans PD1222]
     Length=649
     Score =  398 bits (1023),  Expect = 3e-109
     Identities = 242/669 (36%), Positives = 371/669 (55%), Gaps = 24/669 (3%)

gi|69152776|gb|EAN65926.1|  TonB-dependent receptor [Paracoccus denitrificans PD1222]
     Length=713
     Score =  265 bits (677),  Expect = 4e-69
     Identities = 201/696 (28%), Positives = 329/696 (47%), Gaps = 34/696 (4%)

Structural Features:

cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channel.
             CD-Length = 672 residues, 100.0% aligned
             Score =  199 bits (507), Expect = 8e-52

pfam00593, TonB_dep_Rec, TonB dependent receptor..
             CD-Length = 712 residues, 100.0% aligned
             Score =  178 bits (452), Expect = 2e-45

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion 
transport and metabolism].
             CD-Length = 768 residues,  92.8% aligned
             Score =  147 bits (370), Expect = 4e-36

Genomic Context:

Comment:

ReferenceID:1

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

Reference Type: Blast

Data: 48507_BLAST.html

URL:

ReferenceID:11005

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28148

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `48507`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `64950`	Stop: `62896`
Length: `2055`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAACGTCACCGCTCGGCGTACCGAAGAGCACGCCAAGGACTTGCCCTTCAGCGTGAACGTCATCTCCGGC GAAGAAGCAGAGGAGCGGCGTCTGTACAGTCTGGAGGACGCCCTGCGCCAGACGCCGGGAGTCGACGTGATT ACCAACATGGGGATAGCCAACACGACGCTGCGAATGCGCGGCGTCGGTGCTCTGCAGAAGATCAGCGGGGAC GACACGTCCGTGGTGATCAATGTCGACGGTATGCCGATGTCCGCCTCCAATGCCACGTTGGATATCCTGGAC GTGGAGCGGGTGGAAGTGCTGAAAGGCCCCCAGGGCACCCTGTTCGGACGCAATGCCGAGGCCGGAGCGGTC AACGTGGTGACGCGCAAACCTACACGATTCTTTGAGGGCAGCCTGCGCGGCGAACTCGGCCAGGACAACCAG CGGCTGCTGGAAGGCATGCTCAGTGGACCTCTGTCCGACACTGTTTCGGCACGGTTGGCGATCCGCGGGTCG GGACTCGACAACTACATCGAAAGCAGCCAAACCGGCAAGCCGTTGAACAAGCCTAGAGATTTCAGTGGAAGA GCGAGCCTGCGTTGGGACATCGGCCCGGACTCCGCGCTCAATCTCAGCGCGGGACGTGAAGTGCTGAAACAT CGCGACTGGGTCTATCTCCTGTATCCCTATGGTGATCCGCCCAAGAGCGATATTCCGTCGAACAGCGAGCGC AACCGCCGCGAGGTCGACCGCTATAGCGCCGAGTTCACCCATCAGTTCGACAACTCTCTCTTCACGGCCCTG ACCGGTTTTGCTCGGACCCACCATCGCAGCACCACGCCCATCTACGAGGGACGTACCTATACGCAGCTGATC GGGTTCCGCCCCGACGCCACCTGGAACAGCCTAGTGCGCGAACGCATCTTCAACCATGAACTGCGCCTGAGC TCACTACCGGAAGCAGAGACGTTCTGGGTGGCCGGCGCCAATCTCTATCGGTCGGATCGGGACATGGACCGA TTCGACTCCTACGACACCTTCTTCCTGGAAAACCCCGCCGCCTCCAGCGCCAACCGGGACTTCAGCTCCAGA GCGCATGCGCTGTTCGCAGAGGCCACCTTCCCGGTGGCCCCGGCGACAAAGCTCACCCTCGGCGGGCGTTAC ACCTGGGAAAAGAAGCGCTACGACGCCCACTGGTGGGCAAATCCGGAAAATCCCAGCCCTATTCGTGAGGCC AGGGACGCCCAATCGCTTTCCGACAGCTATGCAACGGGCCGGGTGGCGCTGAGCCATGCTTTGACCCCGCAG CTGAACCTCTACGGTGTTTACGCCCGAGGGTACAAGTCCGGAGGTTTCGACGAGGAAGGCATCGGCTTCACC TCTGGCGGGCAGGATGCGCCCTACAAGCCAGGCTCGGTGAACAGCTACGAAACGGGTCTCAAATTTGAAAGC GAGGATCGGCGGCTGACCTTCAACTTGGCGATGTTCCTCAACCAGGTCAAGAACGACCACCTGCTGATGTTC GATCCGCAAACCATGGCGACCCGCAAGAGCAACCGGAATGTGACCAGCCAAGGGCTGGAGGCTGACTGGAGT TGGATGATCAACAGCCACTGGAGCGTCAGCGGCGGTCTTGCCTATACCCGCGCCAAGATCAGAGGCGGCGGT GATGCTTCGGGTGCTGACGGTGTTGCGTCAGGAAACGACGTGCCCGAAGTGCCTCGCTGGGAAGGGGTCCTT TCCATCGCTTATCAGAAGCCCCTAGGTTCGATGTTCGGGCTCTCCTCGCCGCACTTGCATGCGCGACTGACC AACCGCTACGTGGGTAGCCGCGCCGCGACGCCCCAGAACAACTTTGACCTGGCGTCATACAACAAGCTGGAT TTCAGGGTTGGCATACGCAATGGCGGTACCGAACTCTATGTCTGGGCAGATAATCTGCTCGACAAGCAGTAT GACCTGTACGGCTACCATATCCCGGCGTACATGCCGGGTGGGGCGGACGCCAGGATTGGTGCGCCCGGCCGT GAGCGGACGCTGGGCGTTGGCATGACCATCCAGTTCTGA