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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAN25534.1|AE014809_3 (AE014809) exonuclease VII, large subunit [Bifidobacterium longum NCC2705]
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
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Sequence:
ATGGCGAAGGACCTCAACGGCCTGGCGCGGTCGTTTGCCACAAACGTTTGTACGTTCCCTCTCCAATGCTTG
AGTCGGCGGCAAGCCAGCGCCAGCCTCAGTTCAATACGATGGGTGGACATTGTGATGAATTCAGCCAATGGA
ATCGACATACCCGCCTCTCCAGCCGGCGAGCTGGCACTGACCCCCGAGGCGCTCGCCGAGACACTGAGGGTT
AATGCGCCCAGTGGTCCTGTCACCGTCAAAGGCATGGCCACCGATGTGAAGTACTGGTCGAGGAATGGGGAC
GACAAGGTTCTCAAGATATATGGCCGCCTGGTACTGGGGGATGCCAGTATCCGCTTCGAATTGCAGCCCCAC
GCTGCTGTCCGCAATGATGCTCCCGTCGTTCTCCATGGCTCACTGCGCATCAAGAAGTCGGAGACATTCCGC
ACGACCCACGAAGTCATCCTGGTGGGTGATGTCGTCGGTAGCTGGGTACCCTATGAGCCGGTCCCCCTTGTG
TCACCCGCCCCCCTGGTACGCCAGCAACCGCGGGTGTCCCTGGAGGCGGCACTCGCCAAACACGGACTGGAA
GCCATCGCTATACTCGCCACCGGCACGGCCTGGAACGACCTGGCGGCAGCGGCACAATCGCTCCCCGTCTTC
TCCCACTGTCGCAGGGTAGAGACGAATTTCATGGAGCCCGAGCAGTTCCTAAGCGACCTGGCCAAGGTATGC
CAAGACCCCGCCATTCAAGTGCTGGTGATTGCTAGAGGCGGCGGTGATAGCCTGGAAGTCATCGGAGATTCA
CGGGAGGTGGCCTGTGCGCTATTGGCCTGCGGGCGCCCGTTCTATACGGCTCTGGGGCACGACGACAATGTG
ATGTTGCTGGACAAGCATGCGGACCGGTCGTTCTCCACACCGTCCATCCTGGGGCAGGCACTGATGGAGACC
GCCCGCGACATCACACAACGGCAGGAGCTGCAGGAGAGCCTGGGCAAATTCGCCCAGGAAAACGCATCGCTG
AAAGAACAACTGCTCCAGGCGAACGCCCGCCTGGAGCAGAACCTGGCCAAGGAGCCGTCGGCCATTCATGAG
GCGGACAGCCAAAAAGGAATCGTCGCGCAAGTCCCTGTACCAGCGCCCACCCCTGAAATGCGCAGGTACGTC
ATATGGGCGATTGCGCTTCTGGTGGTCTTTGCCATCGGCCGTTGCTCGACGTGA |
Translation:
MAKDLNGLARSFATNVCTFPLQCLSRRQASASLSSIRWVDIVMNSANGIDIPASPAGELALTPEALAETLRV
NAPSGPVTVKGMATDVKYWSRNGDDKVLKIYGRLVLGDASIRFELQPHAAVRNDAPVVLHGSLRIKKSETFR
TTHEVILVGDVVGSWVPYEPVPLVSPAPLVRQQPRVSLEAALAKHGLEAIAILATGTAWNDLAAAAQSLPVF
SHCRRVETNFMEPEQFLSDLAKVCQDPAIQVLVIARGGGDSLEVIGDSREVACALLACGRPFYTALGHDDNV
MLLDKHADRSFSTPSILGQALMETARDITQRQELQESLGKFAQENASLKEQLLQANARLEQNLAKEPSAIHE
ADSQKGIVAQVPVPAPTPEMRRYVIWAIALLVVFAIGRCST* |
AnnotationID:5508 | GeneID:5504 |
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Modification Date/Time: |
2005-10-04 16:04:51 |
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GeneProduct: | hypothetical protein |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (14) Hypothetical, unclassified, unknown |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | gi|23327047|gb|AAN25534.1| exonuclease VII, large subunit [Bifidobacterium longum NCC2705]
Length=456
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%) |
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Structural Features: | COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair]
CD-Length = 440 residues, only 26.6% aligned
Score = 50.7 bits (121), Expect = 3e-07
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GC ORFID: 48506 | How Found: Glimmer |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: | Glimmer Score: |
Start: 60847 | Stop: 59642 |
Length: 1206 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: | Homolog Bit Score |
Other Homologs: |
GC ORF Sequence |
ATGGCGAAGGACCTCAACGGCCTGGCGCGGTCGTTTGCCACAAACGTTTGTACGTTCCCTCTCCAATGCTTG AGTCGGCGGCAAGCCAGCGCCAGCCTCAGTTCAATACGATGGGTGGACATTGTGATGAATTCAGCCAATGGA ATCGACATACCCGCCTCTCCAGCCGGCGAGCTGGCACTGACCCCCGAGGCGCTCGCCGAGACACTGAGGGTT AATGCGCCCAGTGGTCCTGTCACCGTCAAAGGCATGGCCACCGATGTGAAGTACTGGTCGAGGAATGGGGAC GACAAGGTTCTCAAGATATATGGCCGCCTGGTACTGGGGGATGCCAGTATCCGCTTCGAATTGCAGCCCCAC GCTGCTGTCCGCAATGATGCTCCCGTCGTTCTCCATGGCTCACTGCGCATCAAGAAGTCGGAGACATTCCGC ACGACCCACGAAGTCATCCTGGTGGGTGATGTCGTCGGTAGCTGGGTACCCTATGAGCCGGTCCCCCTTGTG TCACCCGCCCCCCTGGTACGCCAGCAACCGCGGGTGTCCCTGGAGGCGGCACTCGCCAAACACGGACTGGAA GCCATCGCTATACTCGCCACCGGCACGGCCTGGAACGACCTGGCGGCAGCGGCACAATCGCTCCCCGTCTTC TCCCACTGTCGCAGGGTAGAGACGAATTTCATGGAGCCCGAGCAGTTCCTAAGCGACCTGGCCAAGGTATGC CAAGACCCCGCCATTCAAGTGCTGGTGATTGCTAGAGGCGGCGGTGATAGCCTGGAAGTCATCGGAGATTCA CGGGAGGTGGCCTGTGCGCTATTGGCCTGCGGGCGCCCGTTCTATACGGCTCTGGGGCACGACGACAATGTG ATGTTGCTGGACAAGCATGCGGACCGGTCGTTCTCCACACCGTCCATCCTGGGGCAGGCACTGATGGAGACC GCCCGCGACATCACACAACGGCAGGAGCTGCAGGAGAGCCTGGGCAAATTCGCCCAGGAAAACGCATCGCTG AAAGAACAACTGCTCCAGGCGAACGCCCGCCTGGAGCAGAACCTGGCCAAGGAGCCGTCGGCCATTCATGAG GCGGACAGCCAAAAAGGAATCGTCGCGCAAGTCCCTGTACCAGCGCCCACCCCTGAAATGCGCAGGTACGTC ATATGGGCGATTGCGCTTCTGGTGGTCTTTGCCATCGGCCGTTGCTCGACGTGA |
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