ViewGene

Locus Name:
GeneID:
Location:

GeneID:5503
TrivialName: PA14_55170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55170
PAO1 Ortholog Locus:
Sequence Length:534
Protein Length:177
Start: 4900296
Stop: 4900829
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04095.1|AE004506_5 (AE004506) chloramphenicol acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 175/177 (98%), Positives = 176/177 (99%)
Sequence:
ATGGGCAACTATTTCGAGAGCCCCTTCAGGGGCAAGCTGCTCTCGGAACAGGTCAGCAACCCGAACATTCGG
GTGGGGCGCTACAGCTACTACTCCGGCTACTATCACGGGCATTCCTTCGACGACTGCGCCCGCTACCTGATG
CCGGACCGCGACGACGTGGACAAGCTGGTCATCGGCAGTTTCTGCTCGGTCGGCAGTGGCGCCGCCTTCATC
ATGGCCGGCAACCAGGGACACCGCGCCGAGTGGGCATCGACCTTCCCCTTCCACTTCATGCACGAAGAGCCG
GCCTTCGCCGGCGCCGTGAACGGCTACCAGCCAGCGGGCGACACGCTGATCGGCCATGACGTCTGGATCGGT
ACCGAGGCGATGTTCATGCCCGGCGTACGGGTCGGCCACGGAGCCATCATCGGCAGCCGCGCGCTGGTGACC
GGCGATGTCGAGCCCTATGCCATCGTCGGCGGTAACCCGGCCCGGACCATTCGTAAGCGCTTTTCCGATGGC
GATATCCAGAACCTGCTGGAAATGGCCTAG
Translation:
MGNYFESPFRGKLLSEQVSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSVGSGAAFI
MAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHDVWIGTEAMFMPGVRVGHGAIIGSRALVT
GDVEPYAIVGGNPARTIRKRFSDGDIQNLLEMA*
AnnotationID:5507GeneID:5503
AnnotatorUID: urbach
Modification Date/Time: 2006-06-30 18:06:30
Gene Name:cat
Confidence Code:1
GeneProduct:chloramphenicol acetyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:xenobiotic acetyltransferase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
99% identity to the 212 aa PAO1 ortholog PA0706 over 177 aa.
Missing the C-terminal (present in PA0706) 15% due to early
stop codon.
Structural Features:
COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) 
[General function prediction only]
  CD-Length = 190 residues, only  71.1% aligned
  Score =  109 bits (273), Expect = 3e-25
Genomic Context:
Comment:
Ortholog of PA0706 in PAO1, but truncated by stop codon.
ReferenceID:11001
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28144
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5503

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7888 PA0706_tr translation of PA0706 212 82.54 83.01 35 951.0
196988 gb|AAG04095.1|AE004506_5 (AE004506) chloramphenicol acetyltransferase [Pseudomonas aeruginosa PAO1] 212 82.54 83.01 35 951.0
196989 gb|AAD02068.1| (AF036933) chloramphenicol acetyltransferase; CATB7 [Pseudomonas aeruginosa] 212 82.54 83.01 35 951.0
196990 gb|AAP15294.1| (AY232670) chloramphenicol acetyltransferase; CatB2 [Pasteurella multocida] 210 65.23 77.14 33 776.0
196991 gb|AAN41434.1| (AY139601) chloramphenicol acetyltransferase [uncultured bacterium] 210 64.76 76.66 33 771.0
GC ORFID: 48505How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 53611Stop: 53078
Length: 534
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0706 translation of PA0706Homolog Bit Score 370.0
Other Homologs: t_PA0706 translation of PA0706 (BLASTP 370)
GC ORF Sequence
ATGGGCAACTATTTCGAGAGCCCCTTCAGGGGCAAGCTGCTCTCGGAACAGGTCAGCAACCCGAACATTCGG
GTGGGGCGCTACAGCTACTACTCCGGCTACTATCACGGGCATTCCTTCGACGACTGCGCCCGCTACCTGATG
CCGGACCGCGACGACGTGGACAAGCTGGTCATCGGCAGTTTCTGCTCGGTCGGCAGTGGCGCCGCCTTCATC
ATGGCCGGCAACCAGGGACACCGCGCCGAGTGGGCATCGACCTTCCCCTTCCACTTCATGCACGAAGAGCCG
GCCTTCGCCGGCGCCGTGAACGGCTACCAGCCAGCGGGCGACACGCTGATCGGCCATGACGTCTGGATCGGT
ACCGAGGCGATGTTCATGCCCGGCGTACGGGTCGGCCACGGAGCCATCATCGGCAGCCGCGCGCTGGTGACC
GGCGATGTCGAGCCCTATGCCATCGTCGGCGGTAACCCGGCCCGGACCATTCGTAAGCGCTTTTCCGATGGC
GATATCCAGAACCTGCTGGAAATGGCCTAG