ViewGene
Locus Name:
GeneID:
Location:

GeneID:5500
TrivialName: PA14_55240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55240
PAO1 Ortholog Locus:
Sequence Length:666
Protein Length:221
Start: 4906629
Stop: 4905964
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC46249.1| (AP005938) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110]
Identities = 35/101 (34%), Positives = 49/101 (48%)
Sequence:
ATGACGGAGCGGCATTGGCAGGGCGAGGTCTGGCTGGCGCGGGACCACGCGCTGTTCGCCGGGGTCAACGGC
GATACCCGCGAGCACGCGCACTATGCCCACCAGTTGCTGCTGGCGGAGACGCCGCTGCGGGTGCGCGTCGCT
GGCCAGGTACTGGAGGCCCGGCGCTTGCTGGTGCCCTCGCTGCAAGCCCATCGCGTCGACGCGTCGCAGCCG
TTGCTGGCGCTGTACGCCGAGCCGCTGGCGTTCGACAGCGACGACCTGCGTCAGCTTCTCGAGGACGCTCCC
GGCGAGCCCGAGGCGTTGCTGGGGCGGCTTGCGCGGCTGCCTCGTCGACGGCTCGACCGCCGCGTCGAAAAG
GCCCTGGCGGCGCTCGACGAGCAACTCGCGGCGCGGGTCGAGGCGGAAAGACTGGCGCGCAGCGCCAGTCTT
TCGCTGAGCCAACTGGAGCGGCTGTTCGCCGTCCAGGTCGGCCTGTCGGTACGCCGCCTGGTGCTCTGGCGC
CGCCTGTACCTGGCCTTCGCCCTGGCCTTGCAGGGGCGCAGCCTGACCGAGGCGGCCCATCACGCCGGCTTC
GCCGACGCCGCGCACCTGTCGCGCAGCGTACGCAGCCTGCTCGGTATCCGCGCCGGCCTGTCGCTGCCGCAC
CTACGCCTGGCCGGCTGA
Translation:
MTERHWQGEVWLARDHALFAGVNGDTREHAHYAHQLLLAETPLRVRVAGQVLEARRLLVPSLQAHRVDASQP
LLALYAEPLAFDSDDLRQLLEDAPGEPEALLGRLARLPRRRLDRRVEKALAALDEQLAARVEAERLARSASL
SLSQLERLFAVQVGLSVRRLVLWRRLYLAFALALQGRSLTEAAHHAGFADAAHLSRSVRSLLGIRAGLSLPH
LRLAG*
AnnotationID:5504GeneID:5500
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84316756|ref|ZP_00965221.1|  hypothetical protein PaerC_01005447 [Pseudomonas aeruginosa C3719]
Length=221

 Score =  271 bits (693),  Expect = 1e-71
 Identities = 220/221 (99%), Positives = 220/221 (99%), Gaps = 0/221 (0%)

gi|84322901|ref|ZP_00970979.1|  hypothetical protein Paer2_01005882 [Pseudomonas aeruginosa 2192]
Length=221

 Score =  268 bits (685),  Expect = 1e-70
 Identities = 218/221 (98%), Positives = 220/221 (99%), Gaps = 0/221 (0%)

gi|94418180|ref|ZP_01297996.1|  hypothetical protein PaerP_01000334 [Pseudomonas aeruginosa PA7]
Length=221

 Score =  253 bits (646),  Expect = 4e-66
 Identities = 209/221 (94%), Positives = 214/221 (96%), Gaps = 0/221 (0%)

gi|70731882|ref|YP_261624.1|  transcriptional regulator, AraC family [Pseudomonas fluorescens 
Pf-5]
 gi|68346181|gb|AAY93787.1|  transcriptional regulator,  AraC family [Pseudomonas fluorescens 
Pf-5]
Length=226

 Score = 96.3 bits (238),  Expect = 8e-19
 Identities = 108/221 (48%), Positives = 138/221 (62%), Gaps = 3/221 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10995




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28138




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48502How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 47278Stop: 47943

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACGGAGCGGCATTGGCAGGGCGAGGTCTGGCTGGCGCGGGACCACGCGCTGTTCGCCGGGGTCAACGGC 
GATACCCGCGAGCACGCGCACTATGCCCACCAGTTGCTGCTGGCGGAGACGCCGCTGCGGGTGCGCGTCGCT 
GGCCAGGTACTGGAGGCCCGGCGCTTGCTGGTGCCCTCGCTGCAAGCCCATCGCGTCGACGCGTCGCAGCCG 
TTGCTGGCGCTGTACGCCGAGCCGCTGGCGTTCGACAGCGACGACCTGCGTCAGCTTCTCGAGGACGCTCCC 
GGCGAGCCCGAGGCGTTGCTGGGGCGGCTTGCGCGGCTGCCTCGTCGACGGCTCGACCGCCGCGTCGAAAAG 
GCCCTGGCGGCGCTCGACGAGCAACTCGCGGCGCGGGTCGAGGCGGAAAGACTGGCGCGCAGCGCCAGTCTT 
TCGCTGAGCCAACTGGAGCGGCTGTTCGCCGTCCAGGTCGGCCTGTCGGTACGCCGCCTGGTGCTCTGGCGC 
CGCCTGTACCTGGCCTTCGCCCTGGCCTTGCAGGGGCGCAGCCTGACCGAGGCGGCCCATCACGCCGGCTTC 
GCCGACGCCGCGCACCTGTCGCGCAGCGTACGCAGCCTGCTCGGTATCCGCGCCGGCCTGTCGCTGCCGCAC 
CTACGCCTGGCCGGCTGA