ViewGene
Locus Name:
GeneID:
Location:

GeneID:550
TrivialName: PA14_40370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40370
PAO1 Ortholog Locus:PA1865
Sequence Length:1677
Protein Length:558
Start: 3609101
Stop: 3607425
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05254.1|AE004612_8 (AE004612) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 555/559 (99%), Positives = 556/559 (99%), Gaps = 1/559 (0%)
Sequence:
ATGCATGAACAGTACCAGGCTCCGCTTCCCGTGAATTTCCCAGCGCTTCCCGAACCCTTCTACTACCTGCAC
AACTTCCGCGCGGTACTCGCCTGGATCGGCGAACGCTATGCCGATCTGCTCGACGATCAGGAACGTGCCTTC
ATCGCCGCGTTCGCCGAATTGCCCGAGGCCAGCCAGGCCCTGCTGGTGCGCATGGTGATGCGCAAGGGCACG
CTGTTCCGCGAAGGCAAGCTGGCCTATGCCGAGATCGGCGACACGCGCGCCGCCGTGCAACCGCTGTTGGCA
CTGGGCTGGGTGGACGCGCAGCCGGCCCTGGAACTGGCGCAACTGTTCGGCTTGCTGAAGAAGGATGAGTTG
TCGCAGCTGTTCAGGGACCATCTCGGGCGCGCGAACCTGCGCAAGGATGCGCTGCTGGAACGGCTCCAGCCG
TTGTTCCCCGAGGCGCGGCGGCTCGCCGAGTGGCAGGCCGACTTCGCCGAGCCGGTCTACGAGTTGCGCTGC
ATGGCGCTCTGCGACCGCTTGCGGTTGATGTATTTCGGCAATCTGTGGCAGGACTGGTCGGAGTTCGTCCTT
GCCGACCTGGGCATCTATCGTTACGAAAGCGTCGAGTTTTCCGCCGATTCCCGCGGCTTTCGCCTGCGTGCC
GACGTCGACGCCTATCTCCACCTGTTCGACTGCCGCCAGCGCTTCGACCTCGGCGAGCCGCTGGAGGAACTG
CTCGCCGGCCTGCCGGGCGAACCCTACGCCAATCCCTGGCTGGAAGGGCGGCGGGTCAAGCTGCTGTTCCAG
TTCGCCCAGCACTGCGAAAAGCAGCGGGATTTCGACCTGGCCCAGCGGCTCTATCGCCAATCCAGCCACCCC
GGCGCGCGCCTGCGGGCGATTCGCAGCCTGGAACGTGGCGAGCGCTTCGCCGAAGCCCATGCATTGGCGCGG
GAGGCCAGCTGTGCGCCGGAAAGCGACGCCGAACGCCAGGGCCTGGCCCGATTGCTGCCGCGCCTGCAAGGC
AAGCTCGGCCTGCCGCGACAGGCGCGGGCGGCTCCGGAAATCGAACGCCTGGACCTGTGCCTGGCGTTCCCG
AGCGAACCCTGTAGCGTCGAGTGGGCGGTCCGCGAGCACCTGGAAGAGCCCGGTTGCGCGGTGCACTACGTC
GAGAACGGCCTGATCAATTCGCTGTTCGGGCTGCTCTGCTGGGAGGCGATCTTCGCCGCCATTCCCGGGGCG
TTCTTCCATCCCTTCCACAGCGCGCCGGCGGACCTGCACAGCGCCGACTTCCGCCAGCGCCGCGCCGCCCTG
TTCGAGGCCTGCCTGGGACGGCTGGAGGACGGCAGCTACCGCGACGCGATCCGCTGTCGCTACCGCGACAAG
TTCGGCCTGCAGTCGCCCTTCGTCTACTGGGAGCTGCTTGGCGAGGAACTGCTCGAACAGGCGCTCGATTGC
CTGCCGGCGGCCCACCTGCGCGCCTGGTTCGAACGCCTGCTGGAGGATATCCCGGGCAACCGCGCCGGCCTG
CCGGACCTGATCCAGTTCTGGCCGGCGCAGCGTCGCTACCGGATGGTCGAGGTCAAGGGACCGGGCGACCGC
CTGCAGGACAACCAGTTGCGCTGGCTGCAATTCTGCCGCGAGCGGGAGATGCCGGTGGCGGTCTGCTACGTG
CGCTGGCATGTCGATGACTGA
Translation:
MHEQYQAPLPVNFPALPEPFYYLHNFRAVLAWIGERYADLLDDQERAFIAAFAELPEASQALLVRMVMRKGT
LFREGKLAYAEIGDTRAAVQPLLALGWVDAQPALELAQLFGLLKKDELSQLFRDHLGRANLRKDALLERLQP
LFPEARRLAEWQADFAEPVYELRCMALCDRLRLMYFGNLWQDWSEFVLADLGIYRYESVEFSADSRGFRLRA
DVDAYLHLFDCRQRFDLGEPLEELLAGLPGEPYANPWLEGRRVKLLFQFAQHCEKQRDFDLAQRLYRQSSHP
GARLRAIRSLERGERFAEAHALAREASCAPESDAERQGLARLLPRLQGKLGLPRQARAAPEIERLDLCLAFP
SEPCSVEWAVREHLEEPGCAVHYVENGLINSLFGLLCWEAIFAAIPGAFFHPFHSAPADLHSADFRQRRAAL
FEACLGRLEDGSYRDAIRCRYRDKFGLQSPFVYWELLGEELLEQALDCLPAAHLRAWFERLLEDIPGNRAGL
PDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYVRWHVDD*
AnnotationID:559GeneID:550
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1865
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1103




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18245




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:550
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
951
                           PA1865_tr
                           translation of PA1865
                           559
                           99.28
                           99.46
                           1
                           2945.0
     

     
     
38153
                           gb|AAG05254.1|AE004612_8
                           (AE004612) hypothetical protein PA1865 [Pseudomonas aeruginosa PAO1]
                           559
                           99.28
                           99.46
                           1
                           2945.0
     

     
     
38154
                           gb|AAO56750.1|
                           (AE016867) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           582
                           56.35
                           65.97
                           30
                           1609.0
     

     
     
38155
                           gb|AAN68446.1|AE016477_5
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           561
                           55.79
                           68.44
                           15
                           1550.0
     

     
     
38156
                           gb|AAP76490.1|
                           (AY240957) Uvs005 [uncultured bacterium]
                           560
                           55.17
                           67.32
                           7
                           1546.0
     

     






      

          
GC ORFID: 43552How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1865Glimmer Score: 

          
Start: 1344809Stop: 1346485

          
Length: 1677


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1865 translation of PA1865Homolog Bit Score 1138.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7708 (ORF: BLASTX 633.0), t_PA1865 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATGAACAGTACCAGGCTCCGCTTCCCGTGAATTTCCCAGCGCTTCCCGAACCCTTCTACTACCTGCAC 
AACTTCCGCGCGGTACTCGCCTGGATCGGCGAACGCTATGCCGATCTGCTCGACGATCAGGAACGTGCCTTC 
ATCGCCGCGTTCGCCGAATTGCCCGAGGCCAGCCAGGCCCTGCTGGTGCGCATGGTGATGCGCAAGGGCACG 
CTGTTCCGCGAAGGCAAGCTGGCCTATGCCGAGATCGGCGACACGCGCGCCGCCGTGCAACCGCTGTTGGCA 
CTGGGCTGGGTGGACGCGCAGCCGGCCCTGGAACTGGCGCAACTGTTCGGCTTGCTGAAGAAGGATGAGTTG 
TCGCAGCTGTTCAGGGACCATCTCGGGCGCGCGAACCTGCGCAAGGATGCGCTGCTGGAACGGCTCCAGCCG 
TTGTTCCCCGAGGCGCGGCGGCTCGCCGAGTGGCAGGCCGACTTCGCCGAGCCGGTCTACGAGTTGCGCTGC 
ATGGCGCTCTGCGACCGCTTGCGGTTGATGTATTTCGGCAATCTGTGGCAGGACTGGTCGGAGTTCGTCCTT 
GCCGACCTGGGCATCTATCGTTACGAAAGCGTCGAGTTTTCCGCCGATTCCCGCGGCTTTCGCCTGCGTGCC 
GACGTCGACGCCTATCTCCACCTGTTCGACTGCCGCCAGCGCTTCGACCTCGGCGAGCCGCTGGAGGAACTG 
CTCGCCGGCCTGCCGGGCGAACCCTACGCCAATCCCTGGCTGGAAGGGCGGCGGGTCAAGCTGCTGTTCCAG 
TTCGCCCAGCACTGCGAAAAGCAGCGGGATTTCGACCTGGCCCAGCGGCTCTATCGCCAATCCAGCCACCCC 
GGCGCGCGCCTGCGGGCGATTCGCAGCCTGGAACGTGGCGAGCGCTTCGCCGAAGCCCATGCATTGGCGCGG 
GAGGCCAGCTGTGCGCCGGAAAGCGACGCCGAACGCCAGGGCCTGGCCCGATTGCTGCCGCGCCTGCAAGGC 
AAGCTCGGCCTGCCGCGACAGGCGCGGGCGGCTCCGGAAATCGAACGCCTGGACCTGTGCCTGGCGTTCCCG 
AGCGAACCCTGTAGCGTCGAGTGGGCGGTCCGCGAGCACCTGGAAGAGCCCGGTTGCGCGGTGCACTACGTC 
GAGAACGGCCTGATCAATTCGCTGTTCGGGCTGCTCTGCTGGGAGGCGATCTTCGCCGCCATTCCCGGGGCG 
TTCTTCCATCCCTTCCACAGCGCGCCGGCGGACCTGCACAGCGCCGACTTCCGCCAGCGCCGCGCCGCCCTG 
TTCGAGGCCTGCCTGGGACGGCTGGAGGACGGCAGCTACCGCGACGCGATCCGCTGTCGCTACCGCGACAAG 
TTCGGCCTGCAGTCGCCCTTCGTCTACTGGGAGCTGCTTGGCGAGGAACTGCTCGAACAGGCGCTCGATTGC 
CTGCCGGCGGCCCACCTGCGCGCCTGGTTCGAACGCCTGCTGGAGGATATCCCGGGCAACCGCGCCGGCCTG 
CCGGACCTGATCCAGTTCTGGCCGGCGCAGCGTCGCTACCGGATGGTCGAGGTCAAGGGACCGGGCGACCGC 
CTGCAGGACAACCAGTTGCGCTGGCTGCAATTCTGCCGCGAGCGGGAGATGCCGGTGGCGGTCTGCTACGTG 
CGCTGGCATGTCGATGACTGA