ViewGene
Locus Name:
GeneID:
Location:

GeneID:55
TrivialName: PA14_54080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54080
PAO1 Ortholog Locus:PA0788
Sequence Length:3126
Protein Length:1041
Start: 4794649
Stop: 4797774
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04177.1|AE004513_9 (AE004513) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1038/1041 (99%), Positives = 1039/1041 (99%)
Sequence:
ATGAATTGCGCAGCTACAGGCGGTGCGAGCATGGGTGCATCAGAACGATCCACGAACGACCCTTCCGAGCTG
CAACCCTGCAGTCTCCCTGCCTCCGCTTCTCCTCGAAAAAGCCGTCTCCGCCAACGCCTGATGCTGATCGGC
TTCGCCTTGCCGATCCTCGCCGCGGTGGGCATCGTGGTACTTCACGAAGCGCACACCTCGCGGCTGCAGGCA
CGCGAGCTGGCACGCTACGCCGCGACCCTGGACTACGAGGTGCGCCAGGGTCCCAGCGAGGCCATCCTGTTC
CCGGCGGACGGCCCCTTCGACCGCCGCCTCGGCTACCAGTTGCTGCCTTCGTTCATGCAGCGCCTGTACGAC
CGCGACTACGCCATCACCCGCCAGGCGCACTTCTCCCCGGCGCTGATGCGCTACGCCGAACACCGGCTGTTC
CCGCCCTACGCGGAAAAGGCCCAGGCCGGGCTGGACATCGCCGATTGCCGCGGCGTGCCGATCTACGACTTC
CGCTATCCGCAACGGCGCTACGCGAACTTCGCCAGCCTGCCGCCGCTGGCGGTGCAGAGCCTGCTGTTCATC
GAGAACCGCGACCTGCTCGATCACGAACGCCCCTACCTCAACCCGGCGGTGGACTGGGGTCGCTTCACCCAG
GCGGCGCTGTCGCAGGTCGGCAAGATGCTCGGCTTCAGCGCGCACTCCTCCGGCGGCAGCACCCTGGCGACC
CAGATCGAGAAATACCGCCACTCTGCCGAAGGGCGCACCGGCAGCATCGGCGACAAGCTGCGGCAGATGCTC
TCGGCCAGCGTACGCAGCTATCGCGAAGGCCCGGCCAACTTCGCCGCGCGCCAGGACATCGTGCTCACCTAC
CTCAACTCGGTGCCGCTATCGGCGGCGCCGGGCTACGGCGAGGTCACCGGCCTGGCCGATGGCCTGTGGGTC
TGGTACGGCGCCGACTACCGGCAGGTCGGCGAGGCCCTCGACGGCAAGGCCGGACTCGCCGCCCAGGGCCTG
GCCCTGCGCCAGGTGCTGGCGCTGATGATCGCCCACCGCCGGCCTTCCTTCTATCTGGCGCCGCGCGGCCGC
GACGAGCTGGACCGGATGACCGACAGCCACCTGCGGGTCCTGACCCAGGCCGGCGTCATCGAGGCGCCGTTA
CGCGATGCGGCGCTGGCGCAGAAGCTGGCGTTCCGCGACCCACGCAGCCAGCCGACGGTGCAACCGCTGCCG
ACCAACAAGGGCGTGACCCTGGCTCGCACCCGCCTGGCCGGGATGCTCGGCGTGCCACTGTACGACCTCGAC
CGTCTCGACCTGCGGGCCAATACCACCCTCCAGCACGAGTTGCAGGAAAGCGTCACCGCCTACTTGCAGAAA
CTCGCCGACCCGGACTACGCCGCCCAACTCGGGCTGATCGGCGAACGCCTGCTGACCCCGACCTCGACCCGC
TCGGTACGCTACAGCTTCACCCTGTTCGAACGTACGCCGAGCGGCAACCAGGTGCGGGTGCAGACCGACAAC
ACCGACCAGCCCTTCGACATCAACGAAGGCAGCAAGCTGGAGCTGGGCTCCACCGCCAAGCTACGGGTGCTG
GCCAGCTACCTGGAGACCGTCGCGCAGATCCACCGCGACTATGGCGGCATGAGCGTCGCCGAGCTGCGCAAG
GTGGAAGTGGAGCCGCTCGATTTCATCCTCCGCTGGGGCATCGACCACCTGGTGGCCAGCCGCGACCGCGAT
CTTTCCGCGATGCTCCAGGCGGCCATGGAACGGCGCTATTCGGCCAGCCCCTACGAGAGCTTCTTCACCGGC
GGCGGGCTGCACACCTTCAACAACTTCCGCAAGGAAGACAACGGCCGCCGGCCGATGCTGCTGGAAGCCCTG
CGCGAATCGATCAACCTGCCCTTCGTGCGCCTGCTGCGCGACCTGATCCGCCACGACATCTACCAGAACGCC
GGGAGCAAGGTGCAATTGCTGGCCGACGACAAGGACCCGCGCCGCGCCGACTACCTCGACCGTTTCGTCGAC
AAGGAAAGCCAGGTCTACCTGCGCCGCTTCTGGGTCAAGTACCGCGACAAGGACGCCAACCAGCGCCTGGAG
ACCTTCCTCGACGGCCTGCGTCCCTGGCCGGTGCGGCTGGCTGCGATCCATCGCTACCTGCAGCCACAGGCC
GACCTGGCGAGCTTCAGCGCCTTCCTCCGCGAACGCCTGCCCCGCGGCAGCCTGACCGACAAGCGCGCCGCC
GAGCTGTACGAGCGCTACGGCCCGGGCAAGTTCAACCTCAACGACCAGGGCTACGTCGCCCGCGTGCACCCG
CTGGAGCTATGGCTGCTCGGCTATCTGCAGAAGCAGCCGCAGGCGACCTTCGGCGAGGCGGTGGCGGCCAGC
GGCGCCGAGCGCAAGGAAGTCTACGGCTGGCTGTTCAAGTCGCGGCACAAGAACGCCCGCGACAAGCGCATC
CGCATCCTGCTGGAGGTGGAGGCCTTCCTCGACCTGCACCAGCAATGGAAGAAACTCGGCTATCCCTTCGAT
CACCTGGTGCCGTCCTACGCCACCGCCCTGGGCAGCTCCGGCGACCGCCCGGCGGCGCTGGCCGAACTGATG
GGGATCATCGTCAACGATGGCGTGCGCATGCCGACCCTGCGCCTGGAGCACCTCGACTTCGCCCTGGGTACG
CCCTACGAGACGCGCTTCGCCCCGGAAGCCACCCTCGGCCAGAGAGTGATGACCTCGGAGGTCGCCGCCACC
CTGCGCAACGCGCTGTCCCAGGTGGTCGACGCCGGCACCGCGCGGCGCCTGCAAGGCACCTTCAGCCGTCCG
GACGGCGCGCCGCTGGTGATGGGCGGCAAGACCGGCACCGGCGACAACCGCCTGCAGACCTTCAGCGCCGGC
GGCCACGTGCGCAGTTCGAAGGCACTGAACCGCACCGCCACTTTCGTCTTCTACATCGGCCCGCGGCACTTC
GGTACCCTCACCGCCTACGTCGACGGCAGCGAGTCGAGCCAGTTCAAGTTCACCTCGGCCCTGCCGGTGCAG
GTACTCAAGGGCATGGCACCGCTCCTCAGGGACTACCTCGACCCACGCACCGCCACCCGCTGCCAGGTACCG
TTGTCGCCGCAACAGATCGGCCGCCTGTAG
Translation:
MNCAATGGASMGASERSTNDPSELQPCSLPASASPRKSRLRQRLMLIGFALPILAAVGIVVLHEAHTSRLQA
RELARYAATLDYEVRQGPSEAILFPADGPFDRRLGYQLLPSFMQRLYDRDYAITRQAHFSPALMRYAEHRLF
PPYAEKAQAGLDIADCRGVPIYDFRYPQRRYANFASLPPLAVQSLLFIENRDLLDHERPYLNPAVDWGRFTQ
AALSQVGKMLGFSAHSSGGSTLATQIEKYRHSAEGRTGSIGDKLRQMLSASVRSYREGPANFAARQDIVLTY
LNSVPLSAAPGYGEVTGLADGLWVWYGADYRQVGEALDGKAGLAAQGLALRQVLALMIAHRRPSFYLAPRGR
DELDRMTDSHLRVLTQAGVIEAPLRDAALAQKLAFRDPRSQPTVQPLPTNKGVTLARTRLAGMLGVPLYDLD
RLDLRANTTLQHELQESVTAYLQKLADPDYAAQLGLIGERLLTPTSTRSVRYSFTLFERTPSGNQVRVQTDN
TDQPFDINEGSKLELGSTAKLRVLASYLETVAQIHRDYGGMSVAELRKVEVEPLDFILRWGIDHLVASRDRD
LSAMLQAAMERRYSASPYESFFTGGGLHTFNNFRKEDNGRRPMLLEALRESINLPFVRLLRDLIRHDIYQNA
GSKVQLLADDKDPRRADYLDRFVDKESQVYLRRFWVKYRDKDANQRLETFLDGLRPWPVRLAAIHRYLQPQA
DLASFSAFLRERLPRGSLTDKRAAELYERYGPGKFNLNDQGYVARVHPLELWLLGYLQKQPQATFGEAVAAS
GAERKEVYGWLFKSRHKNARDKRIRILLEVEAFLDLHQQWKKLGYPFDHLVPSYATALGSSGDRPAALAELM
GIIVNDGVRMPTLRLEHLDFALGTPYETRFAPEATLGQRVMTSEVAATLRNALSQVVDAGTARRLQGTFSRP
DGAPLVMGGKTGTGDNRLQTFSAGGHVRSSKALNRTATFVFYIGPRHFGTLTAYVDGSESSQFKFTSALPVQ
VLKGMAPLLRDYLDPRTATRCQVPLSPQQIGRL*
AnnotationID:65GeneID:55
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 14:02:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0788
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0744
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope 
biogenesis, outer membrane]
       CD-Length = 661 residues,  99.8% aligned
       Score =  275 bits (704), Expect = 4e-74






   
Genomic Context:






   
Comment:


















    ReferenceID:113




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17255




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:55
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
103
                           PA0788_tr
                           translation of PA0788
                           1041
                           99.71
                           99.80
                           0
                           5340.0
     

     
     
12246
                           gb|AAG04177.1|AE004513_9
                           (AE004513) hypothetical protein PA0788 [Pseudomonas aeruginosa PAO1]
                           1041
                           99.71
                           99.80
                           0
                           5340.0
     

     
     
12248
                           gb|AAN66683.1|AE016296_3
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           1061
                           58.71
                           73.13
                           32
                           3179.0
     

     
     
12247
                           gb|AAO57647.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           1051
                           58.70
                           74.11
                           16
                           3219.0
     

     
     
12249
                           gb|AAF94479.1|
                           (AE004212) hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           1051
                           57.75
                           71.26
                           38
                           3065.0
     

     






      

          
GC ORFID: 43057How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0788Glimmer Score: 

          
Start: 159258Stop: 156133

          
Length: 3126


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0788 translation of PA0788Homolog Bit Score 2061.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6143 (ORF: BLASTX 1232.0), t_PA0788 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTGCGCAGCTACAGGCGGTGCGAGCATGGGTGCATCAGAACGATCCACGAACGACCCTTCCGAGCTG 
CAACCCTGCAGTCTCCCTGCCTCCGCTTCTCCTCGAAAAAGCCGTCTCCGCCAACGCCTGATGCTGATCGGC 
TTCGCCTTGCCGATCCTCGCCGCGGTGGGCATCGTGGTACTTCACGAAGCGCACACCTCGCGGCTGCAGGCA 
CGCGAGCTGGCACGCTACGCCGCGACCCTGGACTACGAGGTGCGCCAGGGTCCCAGCGAGGCCATCCTGTTC 
CCGGCGGACGGCCCCTTCGACCGCCGCCTCGGCTACCAGTTGCTGCCTTCGTTCATGCAGCGCCTGTACGAC 
CGCGACTACGCCATCACCCGCCAGGCGCACTTCTCCCCGGCGCTGATGCGCTACGCCGAACACCGGCTGTTC 
CCGCCCTACGCGGAAAAGGCCCAGGCCGGGCTGGACATCGCCGATTGCCGCGGCGTGCCGATCTACGACTTC 
CGCTATCCGCAACGGCGCTACGCGAACTTCGCCAGCCTGCCGCCGCTGGCGGTGCAGAGCCTGCTGTTCATC 
GAGAACCGCGACCTGCTCGATCACGAACGCCCCTACCTCAACCCGGCGGTGGACTGGGGTCGCTTCACCCAG 
GCGGCGCTGTCGCAGGTCGGCAAGATGCTCGGCTTCAGCGCGCACTCCTCCGGCGGCAGCACCCTGGCGACC 
CAGATCGAGAAATACCGCCACTCTGCCGAAGGGCGCACCGGCAGCATCGGCGACAAGCTGCGGCAGATGCTC 
TCGGCCAGCGTACGCAGCTATCGCGAAGGCCCGGCCAACTTCGCCGCGCGCCAGGACATCGTGCTCACCTAC 
CTCAACTCGGTGCCGCTATCGGCGGCGCCGGGCTACGGCGAGGTCACCGGCCTGGCCGATGGCCTGTGGGTC 
TGGTACGGCGCCGACTACCGGCAGGTCGGCGAGGCCCTCGACGGCAAGGCCGGACTCGCCGCCCAGGGCCTG 
GCCCTGCGCCAGGTGCTGGCGCTGATGATCGCCCACCGCCGGCCTTCCTTCTATCTGGCGCCGCGCGGCCGC 
GACGAGCTGGACCGGATGACCGACAGCCACCTGCGGGTCCTGACCCAGGCCGGCGTCATCGAGGCGCCGTTA 
CGCGATGCGGCGCTGGCGCAGAAGCTGGCGTTCCGCGACCCACGCAGCCAGCCGACGGTGCAACCGCTGCCG 
ACCAACAAGGGCGTGACCCTGGCTCGCACCCGCCTGGCCGGGATGCTCGGCGTGCCACTGTACGACCTCGAC 
CGTCTCGACCTGCGGGCCAATACCACCCTCCAGCACGAGTTGCAGGAAAGCGTCACCGCCTACTTGCAGAAA 
CTCGCCGACCCGGACTACGCCGCCCAACTCGGGCTGATCGGCGAACGCCTGCTGACCCCGACCTCGACCCGC 
TCGGTACGCTACAGCTTCACCCTGTTCGAACGTACGCCGAGCGGCAACCAGGTGCGGGTGCAGACCGACAAC 
ACCGACCAGCCCTTCGACATCAACGAAGGCAGCAAGCTGGAGCTGGGCTCCACCGCCAAGCTACGGGTGCTG 
GCCAGCTACCTGGAGACCGTCGCGCAGATCCACCGCGACTATGGCGGCATGAGCGTCGCCGAGCTGCGCAAG 
GTGGAAGTGGAGCCGCTCGATTTCATCCTCCGCTGGGGCATCGACCACCTGGTGGCCAGCCGCGACCGCGAT 
CTTTCCGCGATGCTCCAGGCGGCCATGGAACGGCGCTATTCGGCCAGCCCCTACGAGAGCTTCTTCACCGGC 
GGCGGGCTGCACACCTTCAACAACTTCCGCAAGGAAGACAACGGCCGCCGGCCGATGCTGCTGGAAGCCCTG 
CGCGAATCGATCAACCTGCCCTTCGTGCGCCTGCTGCGCGACCTGATCCGCCACGACATCTACCAGAACGCC 
GGGAGCAAGGTGCAATTGCTGGCCGACGACAAGGACCCGCGCCGCGCCGACTACCTCGACCGTTTCGTCGAC 
AAGGAAAGCCAGGTCTACCTGCGCCGCTTCTGGGTCAAGTACCGCGACAAGGACGCCAACCAGCGCCTGGAG 
ACCTTCCTCGACGGCCTGCGTCCCTGGCCGGTGCGGCTGGCTGCGATCCATCGCTACCTGCAGCCACAGGCC 
GACCTGGCGAGCTTCAGCGCCTTCCTCCGCGAACGCCTGCCCCGCGGCAGCCTGACCGACAAGCGCGCCGCC 
GAGCTGTACGAGCGCTACGGCCCGGGCAAGTTCAACCTCAACGACCAGGGCTACGTCGCCCGCGTGCACCCG 
CTGGAGCTATGGCTGCTCGGCTATCTGCAGAAGCAGCCGCAGGCGACCTTCGGCGAGGCGGTGGCGGCCAGC 
GGCGCCGAGCGCAAGGAAGTCTACGGCTGGCTGTTCAAGTCGCGGCACAAGAACGCCCGCGACAAGCGCATC 
CGCATCCTGCTGGAGGTGGAGGCCTTCCTCGACCTGCACCAGCAATGGAAGAAACTCGGCTATCCCTTCGAT 
CACCTGGTGCCGTCCTACGCCACCGCCCTGGGCAGCTCCGGCGACCGCCCGGCGGCGCTGGCCGAACTGATG 
GGGATCATCGTCAACGATGGCGTGCGCATGCCGACCCTGCGCCTGGAGCACCTCGACTTCGCCCTGGGTACG 
CCCTACGAGACGCGCTTCGCCCCGGAAGCCACCCTCGGCCAGAGAGTGATGACCTCGGAGGTCGCCGCCACC 
CTGCGCAACGCGCTGTCCCAGGTGGTCGACGCCGGCACCGCGCGGCGCCTGCAAGGCACCTTCAGCCGTCCG 
GACGGCGCGCCGCTGGTGATGGGCGGCAAGACCGGCACCGGCGACAACCGCCTGCAGACCTTCAGCGCCGGC 
GGCCACGTGCGCAGTTCGAAGGCACTGAACCGCACCGCCACTTTCGTCTTCTACATCGGCCCGCGGCACTTC 
GGTACCCTCACCGCCTACGTCGACGGCAGCGAGTCGAGCCAGTTCAAGTTCACCTCGGCCCTGCCGGTGCAG 
GTACTCAAGGGCATGGCACCGCTCCTCAGGGACTACCTCGACCCACGCACCGCCACCCGCTGCCAGGTACCG 
TTGTCGCCGCAACAGATCGGCCGCCTGTAG