ViewGene

Locus Name:
GeneID:
Location:

GeneID:5494
TrivialName: PA14_42710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42710
PAO1 Ortholog Locus:
Sequence Length:192
Protein Length:63
Start: 3799694
Stop: 3799503
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO55572.1| (AE016863) hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 45/63 (71%), Positives = 57/63 (90%)
Sequence:
ATGGGTTCCACCCTCAGCGGGCTGATCAGCCTGGTCATCCTGGCCCTGGATATCTGGGCCATCGTCAACATC
CTGAAAAGCACTGCGGAAACCGCGATGAAGATCATCTGGGTCCTGGTGATCATCGTCCTGCCGGTGCTCGGC
CTGATCATCTGGGCCATCGCCGGCCCGCGCGGCAACGTCAGGCTGTAG
Translation:
MGSTLSGLISLVILALDIWAIVNILKSTAETAMKIIWVLVIIVLPVLGLIIWAIAGPRGNVRL*
AnnotationID:10GeneID:5494
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|84328006|ref|ZP_00976017.1|  hypothetical protein Paer2_01000675 [Pseudomonas aeruginosa 2192]
Length=63

 Score = 81.3 bits (199),  Expect = 1e-14
 Identities = 61/63 (96%), Positives = 61/63 (96%), Gaps = 0/63 (0%)

gi|84321649|ref|ZP_00970004.1|  hypothetical protein PaerC_01000666 [Pseudomonas aeruginosa C3719]
Length=63

 Score = 80.9 bits (198),  Expect = 1e-14
 Identities = 60/63 (95%), Positives = 61/63 (96%), Gaps = 0/63 (0%)

gi|94414553|ref|ZP_01294412.1|  hypothetical protein PaerP_01003628 [Pseudomonas aeruginosa PA7]
Length=63

 Score = 80.1 bits (196),  Expect = 2e-14
 Identities = 59/63 (93%), Positives = 61/63 (96%), Gaps = 0/63 (0%)
Structural Features:
CDD Search: No hits at any threshold.
Genomic Context:
Comment:
ReferenceID:10983
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28126
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5494

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
196987 gb|AAO55572.1| (AE016863) hypothetical protein PSPTO2054 [Pseudomonas syringae pv. tomato str. DC3000] 63 71.42 90.47 0 250.0
GC ORFID: 48496How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene865Glimmer Score:
Start: 1154215Stop: 1154406
Length: 192
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: psyr_15may02_Scaffold1_revised_gene865 related to: gi|15597366|ref|NP_250860.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||B83374 hypothetical protein PA2170 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05558.1|AE004644_5 (AHomolog Bit Score 100.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene865 (ORF: GLIMMER)
GC ORF Sequence
ATGGGTTCCACCCTCAGCGGGCTGATCAGCCTGGTCATCCTGGCCCTGGATATCTGGGCCATCGTCAACATC
CTGAAAAGCACTGCGGAAACCGCGATGAAGATCATCTGGGTCCTGGTGATCATCGTCCTGCCGGTGCTCGGC
CTGATCATCTGGGCCATCGCCGGCCCGCGCGGCAACGTCAGGCTGTAG