ViewGene
Locus Name:
GeneID:
Location:

GeneID:5493
TrivialName: PA14_12180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12180
PAO1 Ortholog Locus:PA3990
Sequence Length:153
Protein Length:50
Start: 1053553
Stop: 1053401
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07377.1|AE004817_1 (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 50/50 (100%), Positives = 50/50 (100%)
Sequence:
ATGGCAAAGAAAAGCAAGCGGCCGAACAAGGCCAAATCCCTGGTCGCCCAGCCACTGTTCCGCAGCCGCCAG
GAACAGGCGAAGAAAGGCAAAGGCAGCTACCGCCGCGAAGCCTCCCGTAACTGGGAGGCTTCTTTTGTTATG
GCGGCCTGA
Translation:
MAKKSKRPNKAKSLVAQPLFRSRQEQAKKGKGSYRREASRNWEASFVMAA*
AnnotationID:5498GeneID:5493
AnnotatorUID: danlee
Modification Date/Time: 2006-02-10 16:04:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3990
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|12375 COG3036, COG3036, Uncharacterized protein conserved in bacteria
[Function unknown]
Length = 66
Score = 53.1 bits (127), Expect = 1e-08
Identities = 21/50 (42%), Positives = 28/50 (56%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10981




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5493
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7887
                           PA3990_tr
                           translation of PA3990
                           50
                           99.99
                           99.99
                           0
                           250.0
     

     
     
196986
                           gb|AAG07377.1|AE004817_1
                           (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           50
                           99.99
                           99.99
                           0
                           250.0
     

     






      

          
GC ORFID: 48495How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3990Glimmer Score: 

          
Start: 3900385Stop: 3900537

          
Length: 153


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3990 translation of PA3990Homolog Bit Score 100.0

          
Other Homologs:  t_PA3990 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAAAGAAAAGCAAGCGGCCGAACAAGGCCAAATCCCTGGTCGCCCAGCCACTGTTCCGCAGCCGCCAG 
GAACAGGCGAAGAAAGGCAAAGGCAGCTACCGCCGCGAAGCCTCCCGTAACTGGGAGGCTTCTTTTGTTATG 
GCGGCCTGA