ViewGene
Locus Name:
GeneID:
Location:

GeneID:5490
TrivialName: PA14_72370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72370
PAO1 Ortholog Locus:PA5482
Sequence Length:162
Protein Length:53
Start: 6445791
Stop: 6445630
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08867.1|AE004961_2 (AE004961) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 53/53 (100%), Positives = 53/53 (100%)
Sequence:
ATGCTTAGTTGGGCTATCACCTTTCTGATCATCGCCATCATCGCTGCCGTCCTCGGGTTTGGTGGCATCGCA
GGTGCCGCCACCGGAATCGCGAAGATCCTCTTCGTGCTGTTCCTGGTGCTCTTCGTGGTCTCGTTCTTCTTC
GGACGCCGTCGCGGCTAG
Translation:
MLSWAITFLIIAIIAAVLGFGGIAGAATGIAKILFVLFLVLFVVSFFFGRRRG*
AnnotationID:5495GeneID:5490
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5482
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL23377.1| (AE008914) putative inner membrane protein [Salmonella
          typhimurium LT2]
          Length = 59

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 33/52 (63%), Positives = 41/52 (78%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10975




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28119




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33227




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5490_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5490
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7884
                           PA5482_tr
                           translation of PA5482
                           53
                           99.99
                           99.99
                           0
                           256.0
     

     
     
196983
                           gb|AAG08867.1|AE004961_2
                           (AE004961) hypothetical protein PA5482 [Pseudomonas aeruginosa PAO1]
                           53
                           99.99
                           99.99
                           0
                           256.0
     

     






      

          
GC ORFID: 48492How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5482Glimmer Score: 

          
Start: 5709480Stop: 5709319

          
Length: 162


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5482 translation of PA5482Homolog Bit Score 103.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTTAGTTGGGCTATCACCTTTCTGATCATCGCCATCATCGCTGCCGTCCTCGGGTTTGGTGGCATCGCA 
GGTGCCGCCACCGGAATCGCGAAGATCCTCTTCGTGCTGTTCCTGGTGCTCTTCGTGGTCTCGTTCTTCTTC 
GGACGCCGTCGCGGCTAG