ViewGene
Locus Name:
GeneID:
Location:

GeneID:549
TrivialName: PA14_00080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00080
PAO1 Ortholog Locus:PA0007
Sequence Length:1707
Protein Length:568
Start: 8671
Stop: 10377
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03397.1|AE004440_7 (AE004440) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 562/568 (98%), Positives = 564/568 (99%)
Sequence:
GTGAAACGCCTGAAAAAGACACTGCACCTTTCAAGCTTGTCCCTCGTTTCCCTGGCTCTTTCTTCCGCCGCC
CTGGCGGCCGCTCCGGTCATGCTCGACCAGGGCAAGGAATGGACCGAAAGCCACCGCCAGGACTTCTACAGC
CGCGACCAGGGCTCGCAGGTGATGCCCCTGCCCTGGCTCAAGGCGTTGCGACAGCCGGATGGAACGCCTTTC
CTCGCCGACAGCCTGGCCCGCTACGGCTATTTGCCCAATCCCAAGGCGCCCGCGGAAGGCCTGCCGGTGGGC
TTCACCGTAGCCGGCACGGGCGCCCGGCAGATGGTCGGCATGACCTGTTCGGCCTGCCATACCCGGCAGATC
GAGGTGAAGGGCACGGCCTATCGGATCGACGGCGGTCCGGCGATCGTCGACTTCCAGGCATTCCTCGCCGAC
CTCGATCGGGCCGTGGGACCGCTGACCAGCGATGACGCCGCCTTCGACGCCTTCGCCAAGCAGATCCTCGGG
GCCAATCCGCCTCCCGGTGCGCGCGACGCCCTGCTCGCGGCGGTGAAGGAATGGTACGAGCCCTATCACACG
CTGATCGAGCGCGCGCTGCCCAAGGACACCTGGGGACCGGCGCGGCTGGACGCGGTATCGATGATCTTCAAC
CGCCTTACCGGGCTGGATATCGGCACCGCGCCGCCCTATCTGATTCCCGACAACATCAAGGCGGCGGATGCG
CCGGTGCGCTACCCGTTCCTGTGGAACGCGGCGCGGCAGAACAAGACCCAGTGGCCCGGCTTCGCCGCCAAC
GGCAACGACCTGCTCGGCCTGGCGCGCAATGTCGGCGAGGTCTACGGGGTGTTCGCCACCTTCCACCCGCAG
AAGAGCAAGTTCCACCTGCTGGGCATGGACTACCTGAAGGTCAACTCGGCCAACTTCCACGGGTTGGGCAAG
CTGGAGGAGCTGATCAAGAAGATCGGCCCGCCGAAGTGGCCCTGGGCGGTGGACAAGCACCTGGCCAGGAAA
GGCGCGCTGATCTTCGCCCGCAAGACCGACGAGGGTGGCTGCGTGGAGTGCCACGGCATCCGGATCAAGGAC
CTGGTGCTTTGGGACACTCCGCTGAGGGACGTCGGCAGCGACAGCCGCCAGCACGCCATCCTCGATGGCCAG
GTGCAGACCGGCGTGATGGAGGGCGCGCGGATGCCGTTCGGCCAGCCGCTGAAGGCGACCGACGAAGCCTTC
GATGTACTCGCCGTAGCGGTGGCCGGTTCGATCCTGCAGCACTTCGTGCCGATCCTCGGTGAGAAGCACGAT
GCCAAGGCGGCGGCGGTCAAGCCGGAAAGCGTGATGACCGACGAAACCCGGCAACTGCTGACCGCCTTCCAG
AAGCCGGTGCGTACCCAGGCCGACCCCTACCCCTACGAGTCGCGGGTCCTGCAGGGGATCTGGGCGGCGGCG
CCGTACCTGCACAACGGCTCGGTGCCGACCCTGGAAGAGTTGCTGAAGCCGGCCGCGGAGCGGGTGGAATCC
TTCCCGGTGGGCTCGGCCTACGACGTGGACAAGGTCGGCCTCGCCGCCCAGCAGACCCAATTCGGCAGCTAT
GTGCTGAAGACCACCGGCTGCGAGCAGCGTGCTTCCGGCAACAGCCGCTGCGGCCATGAGTACGGCACCAGC
CTGTCGGCCGAGGAGAAGCGCGCGCTGCTGGAGTATCTGAAGGTCCTGTAG
Translation:
MKRLKKTLHLSSLSLVSLALSSAALAAAPVMLDQGKEWTESHRQDFYSRDQGSQVMPLPWLKALRQPDGTPF
LADSLARYGYLPNPKAPAEGLPVGFTVAGTGARQMVGMTCSACHTRQIEVKGTAYRIDGGPAIVDFQAFLAD
LDRAVGPLTSDDAAFDAFAKQILGANPPPGARDALLAAVKEWYEPYHTLIERALPKDTWGPARLDAVSMIFN
RLTGLDIGTAPPYLIPDNIKAADAPVRYPFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYGVFATFHPQ
KSKFHLLGMDYLKVNSANFHGLGKLEELIKKIGPPKWPWAVDKHLARKGALIFARKTDEGGCVECHGIRIKD
LVLWDTPLRDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATDEAFDVLAVAVAGSILQHFVPILGEKHD
AKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVES
FPVGSAYDVDKVGLAAQQTQFGSYVLKTTGCEQRASGNSRCGHEYGTSLSAEEKRALLEYLKVL*
AnnotationID:558GeneID:549
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 10:10:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0007
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14157




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18243




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:549
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
950
                           PA0007_tr
                           translation of PA0007
                           568
                           98.94
                           99.29
                           0
                           2950.0
     

     
     
38152
                           gb|AAG03397.1|AE004440_7
                           (AE004440) hypothetical protein PA0007 [Pseudomonas aeruginosa PAO1]
                           568
                           98.76
                           99.29
                           0
                           2947.0
     

     






      

          
GC ORFID: 43551How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0007Glimmer Score: 

          
Start: 5810008Stop: 5811714

          
Length: 1707


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0007 translation of PA0007Homolog Bit Score 1140.0

          
Other Homologs:  t_PA0007 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAACGCCTGAAAAAGACACTGCACCTTTCAAGCTTGTCCCTCGTTTCCCTGGCTCTTTCTTCCGCCGCC 
CTGGCGGCCGCTCCGGTCATGCTCGACCAGGGCAAGGAATGGACCGAAAGCCACCGCCAGGACTTCTACAGC 
CGCGACCAGGGCTCGCAGGTGATGCCCCTGCCCTGGCTCAAGGCGTTGCGACAGCCGGATGGAACGCCTTTC 
CTCGCCGACAGCCTGGCCCGCTACGGCTATTTGCCCAATCCCAAGGCGCCCGCGGAAGGCCTGCCGGTGGGC 
TTCACCGTAGCCGGCACGGGCGCCCGGCAGATGGTCGGCATGACCTGTTCGGCCTGCCATACCCGGCAGATC 
GAGGTGAAGGGCACGGCCTATCGGATCGACGGCGGTCCGGCGATCGTCGACTTCCAGGCATTCCTCGCCGAC 
CTCGATCGGGCCGTGGGACCGCTGACCAGCGATGACGCCGCCTTCGACGCCTTCGCCAAGCAGATCCTCGGG 
GCCAATCCGCCTCCCGGTGCGCGCGACGCCCTGCTCGCGGCGGTGAAGGAATGGTACGAGCCCTATCACACG 
CTGATCGAGCGCGCGCTGCCCAAGGACACCTGGGGACCGGCGCGGCTGGACGCGGTATCGATGATCTTCAAC 
CGCCTTACCGGGCTGGATATCGGCACCGCGCCGCCCTATCTGATTCCCGACAACATCAAGGCGGCGGATGCG 
CCGGTGCGCTACCCGTTCCTGTGGAACGCGGCGCGGCAGAACAAGACCCAGTGGCCCGGCTTCGCCGCCAAC 
GGCAACGACCTGCTCGGCCTGGCGCGCAATGTCGGCGAGGTCTACGGGGTGTTCGCCACCTTCCACCCGCAG 
AAGAGCAAGTTCCACCTGCTGGGCATGGACTACCTGAAGGTCAACTCGGCCAACTTCCACGGGTTGGGCAAG 
CTGGAGGAGCTGATCAAGAAGATCGGCCCGCCGAAGTGGCCCTGGGCGGTGGACAAGCACCTGGCCAGGAAA 
GGCGCGCTGATCTTCGCCCGCAAGACCGACGAGGGTGGCTGCGTGGAGTGCCACGGCATCCGGATCAAGGAC 
CTGGTGCTTTGGGACACTCCGCTGAGGGACGTCGGCAGCGACAGCCGCCAGCACGCCATCCTCGATGGCCAG 
GTGCAGACCGGCGTGATGGAGGGCGCGCGGATGCCGTTCGGCCAGCCGCTGAAGGCGACCGACGAAGCCTTC 
GATGTACTCGCCGTAGCGGTGGCCGGTTCGATCCTGCAGCACTTCGTGCCGATCCTCGGTGAGAAGCACGAT 
GCCAAGGCGGCGGCGGTCAAGCCGGAAAGCGTGATGACCGACGAAACCCGGCAACTGCTGACCGCCTTCCAG 
AAGCCGGTGCGTACCCAGGCCGACCCCTACCCCTACGAGTCGCGGGTCCTGCAGGGGATCTGGGCGGCGGCG 
CCGTACCTGCACAACGGCTCGGTGCCGACCCTGGAAGAGTTGCTGAAGCCGGCCGCGGAGCGGGTGGAATCC 
TTCCCGGTGGGCTCGGCCTACGACGTGGACAAGGTCGGCCTCGCCGCCCAGCAGACCCAATTCGGCAGCTAT 
GTGCTGAAGACCACCGGCTGCGAGCAGCGTGCTTCCGGCAACAGCCGCTGCGGCCATGAGTACGGCACCAGC 
CTGTCGGCCGAGGAGAAGCGCGCGCTGCTGGAGTATCTGAAGGTCCTGTAG