ViewGene

Locus Name:
GeneID:
Location:

GeneID:5488
TrivialName: PA14_22510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22510
PAO1 Ortholog Locus:
Sequence Length:393
Protein Length:130
Start: 1959333
Stop: 1958941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL42469.1| (AE009106) glycine cleavage system component H [Agrobacterium tumefaciens str. C58 (U. Washington)]
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Sequence:
GTGTCCATGCAATTTTCCAAAGACCATTACTGGGTTCGCCTCGCCGACACCCTCGATGGCCACGCTATCGAC
AGCGTTGTCGTCGGCGTCACCCCACGGGCGCTGGCCGGCCTGGGCAACCTGATTTCGGTGATCCTGCCCAAC
GTCGGCGAGACGTTGGCGCAGGGAGCCGCCGCGGCCGAGATCGAGTCGGACAAAGCGGTGACGAACCTGTAC
ACCCCCGTCTCCGGCGAAATCATCGCCGTCAACACGGCCTTGCGCGACACCCCGACGCTTGCCAACACCGAC
CCGTTGGGCGCCGGCTGGTTCTTCAGGGTCAAACTCAGCAACCCGGGGCAACTGGATGCGCTGCTCGACGAG
AAGGCTTATGCCGAACTGTTCTGGGCCCCGTGA
Translation:
MSMQFSKDHYWVRLADTLDGHAIDSVVVGVTPRALAGLGNLISVILPNVGETLAQGAAAAEIESDKAVTNLY
TPVSGEIIAVNTALRDTPTLANTDPLGAGWFFRVKLSNPGQLDALLDEKAYAELFWAP*
AnnotationID:5493GeneID:5488
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 14:02:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|67908235|ref|ZP_00506635.1|  Glycine cleavage H-protein [Polaromonas sp. JS666]
gi|67779635|gb|EAM39253.1|  Glycine cleavage H-protein [Polaromonas sp. JS666]
     Length=122
     Score =  127 bits (318),  Expect = 1e-28
     Identities = 62/125 (49%), Positives = 91/125 (72%), Gaps = 7/125 (5%)
Structural Features:
COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism].
             CD-Length = 131 residues,  90.8% aligned
             Score =  118 bits (298), Expect = 2e-28

pfam01597, GCV_H, Glycine cleavage H-protein.
             CD-Length = 122 residues,  95.1% aligned
             Score =  105 bits (263), Expect = 2e-24
Genomic Context:
Comment:
ReferenceID:15366
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28115
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5488

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
196965 emb|CAC46127.1| (AL591787) PROBABLE GLYCINE CLEAVAGE SYSTEM H PROTEIN [Sinorhizobium meliloti] 130 43.07 65.38 10 278.0
196963 gb|AAL42469.1| (AE009106) glycine cleavage system component H [Agrobacterium tumefaciens str. C58 (U. Washington)] 130 42.30 61.53 10 279.0
196964 gb|AAK87255.1| (AE008071) AGR_C_2700p [Agrobacterium tumefaciens str. C58 (Cereon)] 130 42.30 61.53 10 279.0
196972 emb|CAA52145.1| (X73958) H protein [Escherichia coli] 135 40.00 58.51 11 260.0
196973 gb|AAG58031.1|AE005520_9 (AE005520) in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor [Escherichia coli O157:H7 EDL933] 135 40.00 58.51 11 260.0
GC ORFID: 48490How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5214Glimmer Score:
Start: 2994598Stop: 2994990
Length: 393
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5214 translation of PA5214Homolog Bit Score 104.0
Other Homologs: t_PA5214 (ORF: GLIMMER)
GC ORF Sequence
GTGTCCATGCAATTTTCCAAAGACCATTACTGGGTTCGCCTCGCCGACACCCTCGATGGCCACGCTATCGAC
AGCGTTGTCGTCGGCGTCACCCCACGGGCGCTGGCCGGCCTGGGCAACCTGATTTCGGTGATCCTGCCCAAC
GTCGGCGAGACGTTGGCGCAGGGAGCCGCCGCGGCCGAGATCGAGTCGGACAAAGCGGTGACGAACCTGTAC
ACCCCCGTCTCCGGCGAAATCATCGCCGTCAACACGGCCTTGCGCGACACCCCGACGCTTGCCAACACCGAC
CCGTTGGGCGCCGGCTGGTTCTTCAGGGTCAAACTCAGCAACCCGGGGCAACTGGATGCGCTGCTCGACGAG
AAGGCTTATGCCGAACTGTTCTGGGCCCCGTGA