ViewGene

Locus Name:
GeneID:
Location:

GeneID:5487
TrivialName: PA14_07370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07370
PAO1 Ortholog Locus:PA0567
Sequence Length:159
Protein Length:52
Start: 632701
Stop: 632859
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03956.1|AE004493_1 (AE004493) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 52/52 (100%), Positives = 52/52 (100%)
Sequence:
ATGGACCTGATCCGCATCCTCATCGCCATCCTCCTGCCGCCGCTGGGCGTGTTCCTGCAAGTCGGCTTCGGC
GGCGCCTTCTGGCTGAACATCCTGCTCACCCTGCTCGGCTACATCCCGGGCATCGTCCACGCGGTGTACATC
ATCGCCAAGCGTTGA
Translation:
MDLIRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYIIAKR*
AnnotationID:5492GeneID:5487
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0567
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66004.1|AE016229_5 (AE016775) Pmp3 family protein [Pseudomonas putida KT2440]
          Length = 52

 Score =  103 bits (256), Expect = 3e-22
 Identities = 50/52 (96%), Positives = 51/52 (98%)

>dbj|BAB75495.1| (AP003594) stress induced hydrophobic peptide [Nostoc sp. PCC
          7120]
          Length = 52

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 39/52 (75%), Positives = 46/52 (88%)

>gb|AAL41434.1| (AE009012) stress induced protein [Agrobacterium tumefaciens str.
          C58 (U. Washington)]
          Length = 52

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 38/52 (73%), Positives = 47/52 (90%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:10969
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28113
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33854
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5487_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5487

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7881 PA0567_tr translation of PA0567 52 99.99 99.99 0 262.0
196961 gb|AAG03956.1|AE004493_1 (AE004493) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 52 99.99 99.99 0 262.0
196962 gb|AAN66004.1|AE016229_5 (AE016775) Pmp3 family protein [Pseudomonas putida KT2440] 52 96.15 98.07 0 256.0
GC ORFID: 48489How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0567Glimmer Score:
Start: 6434044Stop: 6434202
Length: 159
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0567 translation of PA0567Homolog Bit Score 105.0
Other Homologs: t_PA0567 (ORF: GLIMMER)
GC ORF Sequence
ATGGACCTGATCCGCATCCTCATCGCCATCCTCCTGCCGCCGCTGGGCGTGTTCCTGCAAGTCGGCTTCGGC
GGCGCCTTCTGGCTGAACATCCTGCTCACCCTGCTCGGCTACATCCCGGGCATCGTCCACGCGGTGTACATC
ATCGCCAAGCGTTGA