ViewGene
Locus Name:
GeneID:
Location:

GeneID:5486
TrivialName: PA14_70180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70180
PAO1 Ortholog Locus:PA5315
Sequence Length:156
Protein Length:51
Start: 6259121
Stop: 6258966
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08700.1|AE004944_4 (AE004944) 50S ribosomal protein L33 [Pseudomonas aeruginosa PAO1]
Identities = 51/51 (100%), Positives = 51/51 (100%)
Sequence:
ATGCGTGAATTGATTCGTCTGGTGTCCAGCGCCGGTACCGGCCACTTCTACACCACCGACAAGAACAAGCGT
ACCAAGCCTGAGAAGATCGAGATCAAGAAGTACGATCCGGTCGTTCGTCAGCACGTGATCTACAAGGAAGCC
AAGATCAAGTAA
Translation:
MRELIRLVSSAGTGHFYTTDKNKRTKPEKIEIKKYDPVVRQHVIYKEAKIK*
AnnotationID:5491GeneID:5486
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:20
Gene Name:rpmG
Confidence Code:2
GeneProduct:50S ribosomal protein L33
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0267,pfam00471
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53644.1| (AE016856) ribosomal protein L33 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 51

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 46/51 (90%), Positives = 49/51 (96%)

>gb|AAL22586.1| (AE008873) 50S ribosomal subunit protein L33 [Salmonella
          typhimurium LT2]
          Length = 55

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 44/51 (86%), Positives = 49/51 (96%)

>gb|AAP19070.1| (AE016991) 50S ribosomal subunit protein L33 [Shigella flexneri
          2a str. 2457T]
          Length = 55

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 44/51 (86%), Positives = 49/51 (96%)






 
Structural Features:
COG0267, RpmG, Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]
CD-Length = 50 residues,  98.0% aligned
Score = 59.8 bits (145), Expect = 6e-11
Identities = 26/49 (53%), Positives = 34/49 (69%)

pfam00471, Ribosomal_L33, Ribosomal protein L33
CD-Length = 48 residues, 100.0% aligned
Score = 53.0 bits (127), Expect = 8e-09
Identities = 21/48 (43%), Positives = 30/48 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10967




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28111




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34747




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5486_cdd.html


    		




 
URL:

















    ReferenceID:35705




  
Author/Investigator(s):
        Lee JS, An G, Friesen JD, Isono K.





  
Title:
        Cloning and the nucleotide sequence of the genes for Escherichia coli ribosomal proteins L28 (rpmB) and L33 (rpmG).




  
PubMed:
        7035835


MedLine:
        




    
Source:
Mol Gen Genet. 1981;184(2):218-23.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7035835









           
Homologs By Global Alignment 

           

       



     
Gene ID:5486
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7880
                           PA5315_tr
                           translation of PA5315
                           51
                           99.99
                           99.99
                           0
                           262.0
     

     
     
196959
                           gb|AAG08700.1|AE004944_4
                           (AE004944) 50S ribosomal protein L33 [Pseudomonas aeruginosa PAO1]
                           51
                           99.99
                           99.99
                           0
                           262.0
     

     
     
196960
                           gb|AAN70846.1|AE016729_4
                           (AE016793) ribosomal protein L33 [Pseudomonas putida KT2440]
                           51
                           92.15
                           98.03
                           0
                           248.0
     

     






      

          
GC ORFID: 48488How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5315Glimmer Score: 

          
Start: 5522810Stop: 5522655

          
Length: 156


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5315 translation of PA5315Homolog Bit Score 105.0

          
Other Homologs:  t_PA5315 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGAATTGATTCGTCTGGTGTCCAGCGCCGGTACCGGCCACTTCTACACCACCGACAAGAACAAGCGT 
ACCAAGCCTGAGAAGATCGAGATCAAGAAGTACGATCCGGTCGTTCGTCAGCACGTGATCTACAAGGAAGCC 
AAGATCAAGTAA