ViewGene
Locus Name:
GeneID:
Location:

GeneID:5484
TrivialName: PA14_61350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61350
PAO1 Ortholog Locus:
Sequence Length:183
Protein Length:60
Start: 5476809
Stop: 5476627
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO54670.1| (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 44/60 (73%), Positives = 53/60 (88%)
Sequence:
ATGCTCGAAAGCCAGGCCTATAGCTGCCCTTACTGCGGGGAACCGGCCGAGGCGCTGCTCGACCTGAGTGCC
GGCGACCAGCAGTACTACGAGGACTGCCCGGTGTGCTGCCGGCCGATCCTGTTCGACCTGCGCACCGATGGG
CAGGACTGGTCACTGAACGTCCGCCGGGAGGATGACTGA
Translation:
MLESQAYSCPYCGEPAEALLDLSAGDQQYYEDCPVCCRPILFDLRTDGQDWSLNVRREDD*
AnnotationID:5489GeneID:5484
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84323329|ref|ZP_00971402.1|  COG1403: Restriction endonuclease [Pseudomonas aeruginosa 2192]
 gi|84317295|ref|ZP_00965746.1|  COG1403: Restriction endonuclease [Pseudomonas aeruginosa C3719]
Length=60

 Score =  134 bits (337),  Expect = 1e-30
 Identities = 60/60 (100%), Positives = 60/60 (100%), Gaps = 0/60 (0%)

gi|94415649|ref|ZP_01295486.1|  hypothetical protein PaerP_01002616 [Pseudomonas aeruginosa PA7]
Length=60

 Score =  130 bits (326),  Expect = 2e-29
 Identities = 58/60 (96%), Positives = 58/60 (96%), Gaps = 0/60 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10963




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28107




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5484
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196957
                           gb|AAO54670.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           60
                           73.33
                           88.33
                           0
                           266.0
     

     






      

          
GC ORFID: 48486How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold3_revised_gene4316Glimmer Score: 

          
Start: 4740489Stop: 4740307

          
Length: 183


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold3_revised_gene4316 related to: gi|17228288|ref|NP_484836.1| (NC_003272) unknown protein [Nostoc sp. PCC 7120] dbj|BAB72750.1| (AP003583) ORF_ID:asl0793~unknown protein [Nostoc sp. PCC 7120]Homolog Bit Score 106.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4316 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGAAAGCCAGGCCTATAGCTGCCCTTACTGCGGGGAACCGGCCGAGGCGCTGCTCGACCTGAGTGCC 
GGCGACCAGCAGTACTACGAGGACTGCCCGGTGTGCTGCCGGCCGATCCTGTTCGACCTGCGCACCGATGGG 
CAGGACTGGTCACTGAACGTCCGCCGGGAGGATGACTGA