ViewGene
Locus Name:
GeneID:
Location:

GeneID:5483
TrivialName: PA14_02010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02010
PAO1 Ortholog Locus:PA0161
Sequence Length:153
Protein Length:50
Start: 183147
Stop: 183299
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03551.1|AE004454_3 (AE004454) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 48/50 (96%), Positives = 48/50 (96%)
Sequence:
GTGGAAAGCCTAAAGCCCGATGAGTCGAAGAGACTTTCAATAGAAGAGTCCGACTGTGTTCCAACCGGTTTC
CAGTGTCCGGAAATACACTGGCAAGACTTCCCGACGCCGAACTTTGATTGCTCCTATTCGACGTCTTCTCAA
GGCCGCTGA
Translation:
MESLKPDESKRLSIEESDCVPTGFQCPEIHWQDFPTPNFDCSYSTSSQGR*
AnnotationID:5488GeneID:5483
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0161
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15364




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28105




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5483
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7878
                           PA0161_tr
                           translation of PA0161
                           50
                           96.00
                           96.00
                           0
                           266.0
     

     
     
196956
                           gb|AAG03551.1|AE004454_3
                           (AE004454) hypothetical protein PA0161 [Pseudomonas aeruginosa PAO1]
                           50
                           94.00
                           96.00
                           0
                           263.0
     

     






      

          
GC ORFID: 48485How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0161Glimmer Score: 

          
Start: 5984486Stop: 5984638

          
Length: 153


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0161 translation of PA0161Homolog Bit Score 107.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGAAAGCCTAAAGCCCGATGAGTCGAAGAGACTTTCAATAGAAGAGTCCGACTGTGTTCCAACCGGTTTC 
CAGTGTCCGGAAATACACTGGCAAGACTTCCCGACGCCGAACTTTGATTGCTCCTATTCGACGTCTTCTCAA 
GGCCGCTGA