ViewGene
Locus Name:
GeneID:
Location:

GeneID:5482
TrivialName: PA14_67900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67900
PAO1 Ortholog Locus:
Sequence Length:261
Protein Length:86
Start: 6062608
Stop: 6062348
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN65922.1|AE016220_4 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 52/85 (61%), Positives = 69/85 (81%)
Sequence:
ATGGCCAGGGCGAAGAGCAAGACGCCGATCCTCCAGCTGGACGCCGCGCAGACCCAGGACGCGGCACTGGCG
ATCAAGCGCTTCATGGAGGACCGCTTCGAACTGGAGCTGGGCTCCTTCGAAGCCGAGGAACTGCTCGATTTC
TTCGCCCGCGAGTTCGCCCCGTACTTCTACAACAAGGCCATCCTCGACGTGCAGTCGTACCTGAAGGAACGG
TTCGAAAGCATCGAGAGCGATGTCTGGGCGCTGGAAAAGAGTTGA
Translation:
MARAKSKTPILQLDAAQTQDAALAIKRFMEDRFELELGSFEAEELLDFFAREFAPYFYNKAILDVQSYLKER
FESIESDVWALEKS*
AnnotationID:5487GeneID:5482
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84323774|ref|ZP_00971841.1|  COG5460: Uncharacterized conserved protein [Pseudomonas aeruginosa 
2192]
Length=86

 Score =  139 bits (350),  Expect = 3e-32
 Identities = 85/86 (98%), Positives = 85/86 (98%), Gaps = 0/86 (0%)

gi|84317790|ref|ZP_00966227.1|  COG5460: Uncharacterized conserved protein [Pseudomonas aeruginosa 
C3719]
Length=86

 Score =  137 bits (345),  Expect = 1e-31
 Identities = 84/86 (97%), Positives = 84/86 (97%), Gaps = 0/86 (0%)

gi|94417616|ref|ZP_01297433.1|  hypothetical protein PaerP_01000393 [Pseudomonas aeruginosa PA7]
Length=86

 Score =  137 bits (345),  Expect = 1e-31
 Identities = 84/86 (97%), Positives = 85/86 (98%), Gaps = 0/86 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10959




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28104




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34885




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5482_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5482
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196954
                           gb|AAN65922.1|AE016220_4
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           86
                           60.46
                           80.23
                           0
                           278.0
     

     
     
196955
                           gb|AAO58762.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           86
                           59.30
                           74.41
                           0
                           267.0
     

     






      

          
GC ORFID: 48484How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold6_revised_gene648Glimmer Score: 

          
Start: 5326293Stop: 5326033

          
Length: 261


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold6_revised_gene6485Homolog Bit Score 108.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene648 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAGGGCGAAGAGCAAGACGCCGATCCTCCAGCTGGACGCCGCGCAGACCCAGGACGCGGCACTGGCG 
ATCAAGCGCTTCATGGAGGACCGCTTCGAACTGGAGCTGGGCTCCTTCGAAGCCGAGGAACTGCTCGATTTC 
TTCGCCCGCGAGTTCGCCCCGTACTTCTACAACAAGGCCATCCTCGACGTGCAGTCGTACCTGAAGGAACGG 
TTCGAAAGCATCGAGAGCGATGTCTGGGCGCTGGAAAAGAGTTGA