ViewGene
Locus Name:
GeneID:
Location:

GeneID:5481
TrivialName: PA14_11330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11330
PAO1 Ortholog Locus:PA4062
Sequence Length:345
Protein Length:114
Start: 985337
Stop: 985681
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07449.1|AE004822_9 (AE004822) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/114 (98%), Positives = 112/114 (98%)
Sequence:
ATGGTGCGGATTCGCGGAAGCATCGGCGACTGGCCGGTGGACCTGACCCTGGAACTGGACGCCGAGGATTGG
CGCCAGCTGGCGCAACACGTGCCCCCGCCGCCGCTGGGCGAGCCGCAGGTCGCGGCGGCCAGGGCGCCGGCG
TCGGCAGCGCCGGTGGATCGCCTGTGGCAGACCGCCCAGGACCTGCTGCGCGGCAGCGGGCGGATCGAGGGG
CCACAGTTGCTGGCGGAGCtggAGGCGTTCAGCGGCAACGCCGGCGCCGCCAAGCAACTGCTGGTGCGCCTG
CGGCACGACGCCCGGGTCAAGGTCGAGGTGGTCGACGGCACCCAGGTGTTCGTCTGA
Translation:
MVRIRGSIGDWPVDLTLELDAEDWRQLAQHVPPPPLGEPQVAAARAPASAAPVDRLWQTAQDLLRGSGRIEG
PQLLAELEAFSGNAGAAKQLLVRLRHDARVKVEVVDGTQVFV*
AnnotationID:5486GeneID:5481
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4062
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10957




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28102




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5481
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7877
                           PA4062_tr
                           translation of PA4062
                           118
                           94.91
                           94.91
                           4
                           574.0
     

     
     
196951
                           gb|AAG07449.1|AE004822_9
                           (AE004822) hypothetical protein PA4062 [Pseudomonas aeruginosa PAO1]
                           118
                           94.91
                           94.91
                           4
                           574.0
     

     
     
196952
                           gb|AAO54227.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           125
                           45.60
                           58.40
                           18
                           258.0
     

     
     
196953
                           gb|AAN66137.1|AE016242_5
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           119
                           45.37
                           57.98
                           10
                           250.0
     

     






      

          
GC ORFID: 48483How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene167Glimmer Score: 

          
Start: 3968600Stop: 3968256

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene167 related to: gi|15599257|ref|NP_252751.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||F83138 hypothetical protein PA4062 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07449.1|AE004822_9 (AHomolog Bit Score 108.0

          
Other Homologs:  t_PA4062 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGCGGATTCGCGGAAGCATCGGCGACTGGCCGGTGGACCTGACCCTGGAACTGGACGCCGAGGATTGG 
CGCCAGCTGGCGCAACACGTGCCCCCGCCGCCGCTGGGCGAGCCGCAGGTCGCGGCGGCCAGGGCGCCGGCG 
TCGGCAGCGCCGGTGGATCGCCTGTGGCAGACCGCCCAGGACCTGCTGCGCGGCAGCGGGCGGATCGAGGGG 
CCACAGTTGCTGGCGGAGCtggAGGCGTTCAGCGGCAACGCCGGCGCCGCCAAGCAACTGCTGGTGCGCCTG 
CGGCACGACGCCCGGGTCAAGGTCGAGGTGGTCGACGGCACCCAGGTGTTCGTCTGA