ViewGene
Locus Name:
GeneID:
Location:

GeneID:5480
TrivialName: PA14_53450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53450
PAO1 Ortholog Locus:
Sequence Length:201
Protein Length:66
Start: 4738624
Stop: 4738824
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN66400.1|AE016267_9 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 41/63 (65%), Positives = 50/63 (79%)
Sequence:
GTGATTGATTTTCATCAGGACGAGGAAGGCCATTGGGTGGCAGTCTTGTCCTGTGGCCATACTCAACACCTG
CGCCACCAACCGCCCTGGCAATCGCGCGCCTGGGTCCTTGACGAAAACGAGCGGCACAGACAGCTCGGCCGC
GAATTTCGCTGCGGCTGGTGTGCCCGGGAAGAAGAAGAGCAGACCAAGGAGCAGTGA
Translation:
MIDFHQDEEGHWVAVLSCGHTQHLRHQPPWQSRAWVLDENERHRQLGREFRCGWCAREEEEQTKEQ*
AnnotationID:5485GeneID:5480
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|63254968|gb|AAY36064.1|  conserved hypothetical protein [Pseudomonas syringae pv. syringae 
B728a]
 gi|66044261|ref|YP_234102.1|  hypothetical protein Psyr_1008 [Pseudomonas syringae pv. syringae 
B728a]
Length=75

 Score =  106 bits (264),  Expect = 3e-22
 Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 0/63 (0%)

gi|26987511|ref|NP_742936.1|  hypothetical protein PP0775 [Pseudomonas putida KT2440]
 gi|24982178|gb|AAN66400.1|  conserved hypothetical protein [Pseudomonas putida KT2440]
Length=100

 Score =  103 bits (257),  Expect = 2e-21
 Identities = 41/63 (65%), Positives = 50/63 (79%), Gaps = 0/63 (0%)

gi|70728321|ref|YP_258070.1|  hypothetical protein PFL_0939 [Pseudomonas fluorescens Pf-5]
 gi|68342620|gb|AAY90226.1|  conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length=112

 Score =  103 bits (257),  Expect = 2e-21
 Identities = 41/54 (75%), Positives = 47/54 (87%), Gaps = 0/54 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15362




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28100




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5480
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196950
                           gb|AAN66400.1|AE016267_9
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           100
                           41.00
                           51.00
                           34
                           256.0
     

     






      

          
GC ORFID: 48482How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold3_revised_gene5045Glimmer Score: 

          
Start: 215283Stop: 215083

          
Length: 201


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold3_revised_gene5045 related to: gi|17545741|ref|NP_519143.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] emb|CAD14724.1| (AL646062) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]Homolog Bit Score 108.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGATTGATTTTCATCAGGACGAGGAAGGCCATTGGGTGGCAGTCTTGTCCTGTGGCCATACTCAACACCTG 
CGCCACCAACCGCCCTGGCAATCGCGCGCCTGGGTCCTTGACGAAAACGAGCGGCACAGACAGCTCGGCCGC 
GAATTTCGCTGCGGCTGGTGTGCCCGGGAAGAAGAAGAGCAGACCAAGGAGCAGTGA