ViewGene
Locus Name:
GeneID:
Location:

GeneID:5477
TrivialName: PA14_54880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54880
PAO1 Ortholog Locus:
Sequence Length:879
Protein Length:292
Start: 4863513
Stop: 4862635
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP19099.1| (AE016991) serine acetyltransferase [Shigella flexneri 2a str. 2457T]
Identities = 121/236 (51%), Positives = 152/236 (64%), Gaps = 2/236 (0%)
Sequence:
CTGGCAGGCAGGACCATCAGGAACCGCCAGAATCATGCTGAAAACCCCGTTATCGTCCGACCGGCAGCCTGC
CGAACAGCAGCAAAGGGTATCTGTATGAGGAACAGTCCCGCAGAGGCGCTGGCCGCGGCTTGCACCCCGACA
GCGTCAGTCAGGTGCGTCTGGCAACAGCTTCAGGCGGAGGCCAGGCGCGCGCCGCAGGAAGACTCTGTATTG
GGGCCGCTCATCGATAGATCCATTCTCTGCCGCAGCTCATTCTGGCAGGCGCTGTCCTCCCTGCTGAGCGCT
AAGCTGTCCATCCAAACGGTGTCCATGGACATATGGCTGGAGTGCTTTGCCGATGCTCATGGACCGGAGGCC
GAGGAGGCGGCGAAAGACGACTTGGCCGCGACCCTCCTTCGGGATCCGGCAGCGGAGAACCTGTTGGTGCCC
TTTCTCTGCTACAAGGGCTTCCACGCACTGCAGTGCCACCGGGTTGCCCACCAGCTATGGAACGCCCGCAGA
AGGACACTCGCGCGTCTGTTGCAGAGCCGGGTTTCTGAAGTCTTCGGTGTGGATATCCATCCTGCCGTTCCG
GTGGGGCGGCGCGTCTTCATAGATCACGCAACAGGAATCGTCATCGGCGAGACTGCCAGCATCGGTAACGAC
GTCTCGATTCTCCAGAAAGTTACTCTGGGTGGAACCGGCAAGGAGTATGGGGACCGCCATCCGAAGATACGG
GACCGAGCCTTCATTGCAGCAGGCGCGACGATACTGGGCAACATTGAAATCGGCTTTGCCTCCACCGTCGGC
GCTGGAAGCGTCGTGCTTGAGCCGGTTCCGCCTTACTCCACGGTCGTTGGCGTACCTGCTCGCATTCTTTGC
ACGAATGGACTTTGA
Translation:
MAGRTIRNRQNHAENPVIVRPAACRTAAKGICMRNSPAEALAAACTPTASVRCVWQQLQAEARRAPQEDSVL
GPLIDRSILCRSSFWQALSSLLSAKLSIQTVSMDIWLECFADAHGPEAEEAAKDDLAATLLRDPAAENLLVP
FLCYKGFHALQCHRVAHQLWNARRRTLARLLQSRVSEVFGVDIHPAVPVGRRVFIDHATGIVIGETASIGND
VSILQKVTLGGTGKEYGDRHPKIRDRAFIAAGATILGNIEIGFASTVGAGSVVLEPVPPYSTVVGVPARILC
TNGL*
AnnotationID:5482GeneID:5477
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 15:03:51
Gene Name:
Confidence Code:3
GeneProduct:putative serine acetyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1045, KOG4750
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|56697110|ref|YP_167473.1|  serine O-acetyltransferase [Silicibacter pomeroyi DSS-3]
     Length=270
     Score =  228 bits (582),  Expect = 1e-58
     Identities = 123/241 (51%), Positives = 157/241 (65%), Gaps = 2/241 (0%)

gi|69150517|gb|EAN63771.1|  Serine O-acetyltransferase [Paracoccus denitrificans PD1222]
     Length=279
     Score =  228 bits (581),  Expect = 2e-58
     Identities = 124/236 (52%), Positives = 153/236 (64%), Gaps = 2/236 (0%)

gi|16131478|ref|NP_418064.1|  serine acetyltransferase [Escherichia coli K12]
gi|73857633|gb|AAZ90340.1|  serine acetyltransferase [Shigella sonnei Ss046]
gi|30043378|gb|AAP19099.1|  serine acetyltransferase [Shigella flexneri 2a str. 2457T]
gi|26110680|gb|AAN82865.1|  Serine acetyltransferase [Escherichia coli CFT073]
gi|71152746|sp|P0A9D4|CYSE_ECOLI  Serine acetyltransferase (SAT)
gi|71152747|sp|P0A9D7|CYSE_SHIFL  Serine acetyltransferase (SAT)
gi|71152745|sp|P0A9D5|CYSE_ECOL6  Serine acetyltransferase (SAT)
gi|71152744|sp|P0A9D6|CYSE_ECO57  Serine acetyltransferase (SAT)
gi|15833739|ref|NP_312512.1|  serine acetyltransferase [Escherichia coli O157:H7]
gi|15804151|ref|NP_290190.1|  serine acetyltransferase [Escherichia coli O157:H7 EDL933]
gi|145694|gb|AAA23659.1|  33 Kd protein (cysE)
gi|145676|gb|AAA23648.1|  serine acetyltransferase
     Length=273
     Score =  226 bits (577),  Expect = 5e-58
     Identities = 121/236 (51%), Positives = 152/236 (64%), Gaps = 2/236 (0%)







 
Structural Features:
gnl|CDD|10772 COG1045, CysE, Serine acetyltransferase [Amino acid transport
and metabolism].
             CD-Length = 194 residues,  78.4% aligned
             Score =  221 bits (565), Expect = 7e-59






   
Genomic Context:






   
Comment:


















    ReferenceID:15360




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28095




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5477
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196847
                           gb|AAK24618.1|
                           (AE005933) serine acetyltransferase [Caulobacter crescentus CB15]
                           317
                           39.74
                           49.84
                           63
                           533.0
     

     
     
196835
                           gb|AAA23648.1|
                           (M15745) serine acetyltransferase [Escherichia coli]
                           318
                           38.99
                           49.68
                           71
                           570.0
     

     
     
196834
                           gb|AAA23659.1|
                           (M34333) 33 Kd protein (cysE) [Escherichia coli]
                           318
                           38.99
                           49.68
                           71
                           570.0
     

     
     
196833
                           dbj|BAB37908.1|
                           (AP002566) serine acetyltransferase [Escherichia coli O157:H7]
                           318
                           38.99
                           49.68
                           71
                           570.0
     

     
     
196831
                           gb|AAG58754.1|AE005588_5
                           (AE005588) serine acetyltransferase [Escherichia coli O157:H7 EDL933]
                           318
                           38.99
                           49.68
                           71
                           570.0
     

     






      

          
GC ORFID: 48479How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene3265Glimmer Score: 

          
Start: 90394Stop: 91272

          
Length: 879


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3265 related to: gi|2494014|sp|Q59967|SRPH_SYNP7 SERINE ACETYLTRANSFERASE, PLASMID (SAT) pir||S55322 srpH protein - Synechococcus sp. (strain PCC 7942) plasmid pANL gb|AAA86726.1| (U23436) serine acetyltransferase [SynecHomolog Bit Score 112.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGGCAGGCAGGACCATCAGGAACCGCCAGAATCATGCTGAAAACCCCGTTATCGTCCGACCGGCAGCCTGC 
CGAACAGCAGCAAAGGGTATCTGTATGAGGAACAGTCCCGCAGAGGCGCTGGCCGCGGCTTGCACCCCGACA 
GCGTCAGTCAGGTGCGTCTGGCAACAGCTTCAGGCGGAGGCCAGGCGCGCGCCGCAGGAAGACTCTGTATTG 
GGGCCGCTCATCGATAGATCCATTCTCTGCCGCAGCTCATTCTGGCAGGCGCTGTCCTCCCTGCTGAGCGCT 
AAGCTGTCCATCCAAACGGTGTCCATGGACATATGGCTGGAGTGCTTTGCCGATGCTCATGGACCGGAGGCC 
GAGGAGGCGGCGAAAGACGACTTGGCCGCGACCCTCCTTCGGGATCCGGCAGCGGAGAACCTGTTGGTGCCC 
TTTCTCTGCTACAAGGGCTTCCACGCACTGCAGTGCCACCGGGTTGCCCACCAGCTATGGAACGCCCGCAGA 
AGGACACTCGCGCGTCTGTTGCAGAGCCGGGTTTCTGAAGTCTTCGGTGTGGATATCCATCCTGCCGTTCCG 
GTGGGGCGGCGCGTCTTCATAGATCACGCAACAGGAATCGTCATCGGCGAGACTGCCAGCATCGGTAACGAC 
GTCTCGATTCTCCAGAAAGTTACTCTGGGTGGAACCGGCAAGGAGTATGGGGACCGCCATCCGAAGATACGG 
GACCGAGCCTTCATTGCAGCAGGCGCGACGATACTGGGCAACATTGAAATCGGCTTTGCCTCCACCGTCGGC 
GCTGGAAGCGTCGTGCTTGAGCCGGTTCCGCCTTACTCCACGGTCGTTGGCGTACCTGCTCGCATTCTTTGC 
ACGAATGGACTTTGA