ViewGene

Locus Name:
GeneID:
Location:

GeneID:5476
TrivialName: PA14_60320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60320
PAO1 Ortholog Locus:
Sequence Length:426
Protein Length:141
Start: 5376956
Stop: 5377381
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP81278.1| (AY273871) PilE [Pseudomonas aeruginosa]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGAAGTCGAACAGAGGCTTCACTCTCATCGAGTTGATGATCGTCGTAGTAATCATCGCTATTCTTGCTGGT
ATCGCCTACCCCAGCTACGACGAATACGTGAAGCGCGGGAATCGCACCGAAGGACAGGCATTACTCAGCGAA
GCAGCCGCTACTCAAGAGCGCTATTTTTCACAGAACAATACTTATATCACTACCCAAGCCGACATCGGCAAG
CTGCATATGCGCAACACATCGGGCACCACAGTGAAGTCCTCCACAGGCAAATACAGCCTTACCGTCGATACG
GTAGCCAACGACGGAGGTTATCGCCTTATCGCTAACCAGGCATTCAACGATCTTGATTGTGGCAACCTGACC
TTGACCGCCAACGGCGAGAAAGGCCGGACTGGAAGCAAGAAGAGCGTTGCAGAATGCTGGCGCTAA
Translation:
MKSNRGFTLIELMIVVVIIAILAGIAYPSYDEYVKRGNRTEGQALLSEAAATQERYFSQNNTYITTQADIGK
LHMRNTSGTTVKSSTGKYSLTVDTVANDGGYRLIANQAFNDLDCGNLTLTANGEKGRTGSKKSVAECWR*
AnnotationID:5481GeneID:5476
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 17:05:51
Gene Name:pilE
Confidence Code:2
GeneProduct:type 4 fimbrial biogenesis protein PilE
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Pilin biosynthesis
Homology:
gi|9950801|gb|AAG07944.1|  type 4 fimbrial biogenesis protein PilE [Pseudomonas aeruginosa PAO1]
     Length=141
     Score =  112 bits (279),  Expect = 5e-24
     Identities = 68/143 (47%), Positives = 88/143 (61%), Gaps = 13/143 (9%)

gi|53756457|gb|AAU90748.1|  type 4 fimbrial biogenesis protein PilE [Methylococcus capsulatus         
str. Bath]
     Length=150
     Score =  103 bits (256),  Expect = 2e-21
     Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 11/138 (7%)
Structural Features:
COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular
trafficking and secretion].
             CD-Length = 139 residues,  99.3% aligned
             Score = 65.8 bits (160), Expect = 2e-12
Genomic Context:
PA14 GeneIDs 5422 to 5476 (Trivial Names PA14_60280 to PA14_60320) replace PAO1 genes 
PA4549 through PA4556 required for type 4 fimbrial biogenesis.  PA14 ORFs corresponding 
to fimT (PA4549), pilV (PA4551), and pilY2 (PA4555) are absent.
Comment:
ReferenceID:10947
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28093
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5476

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
196823 gb|AAP81278.1| (AY273871) PilE [Pseudomonas aeruginosa] 141 99.99 99.99 0 719.0
7873 PA4556_tr translation of PA4556 148 46.62 61.48 14 291.0
196824 gb|AAG07944.1|AE004869_8 (AE004869) type 4 fimbrial biogenesis protein PilE [Pseudomonas aeruginosa PAO1] 148 46.62 61.48 14 291.0
196825 gb|AAA93504.1| (L76605) Involved in type 4 fimbrial biogenesis and contains a prepilin-l ike leader sequence; reference U02552 [Pseudomonas aeruginosa] 148 46.62 61.48 14 291.0
196826 gb|AAA79363.1| (U02552) PilE [Pseudomonas aeruginosa] 148 46.62 61.48 14 291.0
GC ORFID: 48478How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4556Glimmer Score:
Start: 4640635Stop: 4641060
Length: 426
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4556 translation of PA4556Homolog Bit Score 112.0
Other Homologs:
GC ORF Sequence
ATGAAGTCGAACAGAGGCTTCACTCTCATCGAGTTGATGATCGTCGTAGTAATCATCGCTATTCTTGCTGGT
ATCGCCTACCCCAGCTACGACGAATACGTGAAGCGCGGGAATCGCACCGAAGGACAGGCATTACTCAGCGAA
GCAGCCGCTACTCAAGAGCGCTATTTTTCACAGAACAATACTTATATCACTACCCAAGCCGACATCGGCAAG
CTGCATATGCGCAACACATCGGGCACCACAGTGAAGTCCTCCACAGGCAAATACAGCCTTACCGTCGATACG
GTAGCCAACGACGGAGGTTATCGCCTTATCGCTAACCAGGCATTCAACGATCTTGATTGTGGCAACCTGACC
TTGACCGCCAACGGCGAGAAAGGCCGGACTGGAAGCAAGAAGAGCGTTGCAGAATGCTGGCGCTAA