ViewGene
Locus Name:
GeneID:
Location:

GeneID:5473
TrivialName: PA14_56970
AnnotatorUID: diggins
Modification Date/Time:2006-04-25 06:06:33
LocusName:PA14_56970
PAO1 Ortholog Locus:
Sequence Length:330
Protein Length:109
Start: 5077659
Stop: 5077330
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD85614.1| (BX321862) DUF190 [Nitrosomonas europaea ATCC 19718]
Identities = 55/102 (53%), Positives = 73/102 (71%)
Sequence:
ATGCAAGGCTATCAACTGACCTTCATCACCCAGCAGGGGCGCTGCCACCAGGGCCAGCCGATCTGCGACTGG
CTGCTGCAAGAGGCGCGCCGCCTGGGCGTGCGCGGTGCCACCGCGTTGGCTGCCAGCGAAGGCTTCGGCCAG
AGCGGCCGGCTGCATTCGATGCATTTCTTCGAGCTGGCCGACCAGCCGCAGGAAATCCTCATGGCGGTCGAT
CCCGAGCAGGCAGAACGGCTGTTCGAGTCGATCCGCCAGGCCGGCGTGCGGCTGTTCTACATGAAGGTGCCC
ATCGAGTTCGGCGTGCTGGGAGCGGACGAACCGTCTCCCTGA
Translation:
MQGYQLTFITQQGRCHQGQPICDWLLQEARRLGVRGATALAASEGFGQSGRLHSMHFFELADQPQEILMAVD
PEQAERLFESIRQAGVRLFYMKVPIEFGVLGADEPSP*
AnnotationID:5478GeneID:5473
AnnotatorUID: danlee
Modification Date/Time: 2006-05-02 14:02:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84316907|ref|ZP_00965365.1|  COG1993: Uncharacterized conserved protein [Pseudomonas aeruginosa 
C3719]
Length=109

 Score =  212 bits (540),  Expect = 3e-54
 Identities = 105/108 (97%), Positives = 106/108 (98%), Gaps = 0/108 (0%)

gi|84323086|ref|ZP_00971163.1|  COG1993: Uncharacterized conserved protein [Pseudomonas aeruginosa 
2192]
Length=109

 Score =  211 bits (537),  Expect = 7e-54
 Identities = 104/108 (96%), Positives = 106/108 (98%), Gaps = 0/108 (0%)








 
Structural Features:
COG1993, Uncharacterized conserved protein [Function unknown].
             CD-Length = 109 residues,  65.1% aligned
             Score = 55.6 bits (134), Expect = 1e-09

pfam02641, DUF190, Uncharacterized ACR, COG1993..
             CD-Length = 101 residues,  76.2% aligned
             Score = 48.7 bits (116), Expect = 1e-07






   
Genomic Context:






   
Comment:


















    ReferenceID:10941




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17139




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5473_cdd.html


    		




 
URL:

















    ReferenceID:28088




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5473
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196818
                           gb|AAQ58942.1|
                           (AE016914) Conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           109
                           54.12
                           72.47
                           4
                           333.0
     

     
     
196819
                           emb|CAD85614.1|
                           (BX321862) DUF190 [Nitrosomonas europaea ATCC 19718]
                           109
                           50.45
                           66.97
                           6
                           305.0
     

     
     
196820
                           gb|AAO58066.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           109
                           45.87
                           67.88
                           2
                           280.0
     

     






      

          
GC ORFID: 48475How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold10_revised_gene1604Glimmer Score: 

          
Start: 4341335Stop: 4341006

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold10_revised_gene1604 related to: gi|15642796|ref|NP_227837.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima] sp|Q9WXM9|Y021_THEMA Hypothetical protein TM0021 pir||G72427 conserved hypothetical protein - Thermotoga marHomolog Bit Score 113.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1604 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGGCTATCAACTGACCTTCATCACCCAGCAGGGGCGCTGCCACCAGGGCCAGCCGATCTGCGACTGG 
CTGCTGCAAGAGGCGCGCCGCCTGGGCGTGCGCGGTGCCACCGCGTTGGCTGCCAGCGAAGGCTTCGGCCAG 
AGCGGCCGGCTGCATTCGATGCATTTCTTCGAGCTGGCCGACCAGCCGCAGGAAATCCTCATGGCGGTCGAT 
CCCGAGCAGGCAGAACGGCTGTTCGAGTCGATCCGCCAGGCCGGCGTGCGGCTGTTCTACATGAAGGTGCCC 
ATCGAGTTCGGCGTGCTGGGAGCGGACGAACCGTCTCCCTGA