ViewGene
Locus Name:
GeneID:
Location:

GeneID:5469
TrivialName: PA14_32310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32310
PAO1 Ortholog Locus:PA2501
Sequence Length:168
Protein Length:55
Start: 2808461
Stop: 2808628
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05889.1|AE004677_6 (AE004677) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 55/55 (100%), Positives = 55/55 (100%)
Sequence:
ATGGATTCCTACGGCGTCACTTTCGCAATCATCGTGCTGGGCATGCTCTTCATCGGCACGGGTTTCACCAAG
CGCGACACGCCGTTCGGCCTGTTCCTCATGTGGGTCGGGGTGATCTGCATGCTGGCCATCATCAGCTACCGC
ATCTATATCGCCACCCATTACTGA
Translation:
MDSYGVTFAIIVLGMLFIGTGFTKRDTPFGLFLMWVGVICMLAIISYRIYIATHY*
AnnotationID:5474GeneID:5469
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 16:04:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2501
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10935




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28080




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5469
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7869
                           PA2501_tr
                           translation of PA2501
                           55
                           99.99
                           99.99
                           0
                           289.0
     

     
     
196816
                           gb|AAG05889.1|AE004677_6
                           (AE004677) hypothetical protein PA2501 [Pseudomonas aeruginosa PAO1]
                           55
                           99.99
                           99.99
                           0
                           289.0
     

     






      

          
GC ORFID: 48471How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2501Glimmer Score: 

          
Start: 2145463Stop: 2145296

          
Length: 168


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2501 translation of PA2501Homolog Bit Score 115.0

          
Other Homologs:  t_PA2501 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTCCTACGGCGTCACTTTCGCAATCATCGTGCTGGGCATGCTCTTCATCGGCACGGGTTTCACCAAG 
CGCGACACGCCGTTCGGCCTGTTCCTCATGTGGGTCGGGGTGATCTGCATGCTGGCCATCATCAGCTACCGC 
ATCTATATCGCCACCCATTACTGA