ViewGene
Locus Name:
GeneID:
Location:

GeneID:5468
TrivialName: PA14_03710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03710
PAO1 Ortholog Locus:PA0284
Sequence Length:183
Protein Length:60
Start: 332303
Stop: 332121
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03673.1|AE004466_7 (AE004466) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 60/60 (100%), Positives = 60/60 (100%)
Sequence:
ATGAGCGCAACCCTCAGAAGCCTGGATGGCCAGGACGAAGCCACCATCCTGCGTGAAATCCAGAGTGCCCTG
CGCGGCCTGCGCTTCGGCGCCGTCGAGATCACCGTGCACAACGGCCAGGTGGTGCAGATCGAGCGCAAGGAA
AAATTCCGTCTGCAGCAACCGGCCGTCAAGCAGGCCTGA
Translation:
MSATLRSLDGQDEATILREIQSALRGLRFGAVEITVHNGQVVQIERKEKFRLQQPAVKQA*
AnnotationID:5473GeneID:5468
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 06:06:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0284
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10933




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28079




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33622




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5468_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5468
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7868
                           PA0284_tr
                           translation of PA0284
                           60
                           99.99
                           99.99
                           0
                           290.0
     

     
     
196813
                           gb|AAG03673.1|AE004466_7
                           (AE004466) hypothetical protein PA0284 [Pseudomonas aeruginosa PAO1]
                           60
                           99.99
                           99.99
                           0
                           290.0
     

     
     
196814
                           gb|AAO53852.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           60
                           86.66
                           91.66
                           0
                           253.0
     

     
     
196815
                           gb|AAN70737.1|AE016717_5
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           60
                           86.66
                           90.00
                           0
                           250.0
     

     






      

          
GC ORFID: 48470How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0284Glimmer Score: 

          
Start: 6133644Stop: 6133462

          
Length: 183


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0284 translation of PA0284Homolog Bit Score 116.0

          
Other Homologs:  t_PA0284 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCAACCCTCAGAAGCCTGGATGGCCAGGACGAAGCCACCATCCTGCGTGAAATCCAGAGTGCCCTG 
CGCGGCCTGCGCTTCGGCGCCGTCGAGATCACCGTGCACAACGGCCAGGTGGTGCAGATCGAGCGCAAGGAA 
AAATTCCGTCTGCAGCAACCGGCCGTCAAGCAGGCCTGA