ViewGene
Locus Name:
GeneID:
Location:

GeneID:5465
TrivialName: PA14_28850
AnnotatorUID: diggins
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28850
PAO1 Ortholog Locus:
Sequence Length:315
Protein Length:104
Start: 2491674
Stop: 2491988
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01526.1| (AF241171) transposase A [Pseudomonas aeruginosa]
Identities = 62/71 (87%), Positives = 62/71 (87%), Gaps = 3/71 (4%)
Sequence:
GTGTCTGATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCCGCGGCCCTGGTGTTGGA
CCAAGGCTACAGCCATATCGACGCCTGCCGTTCGCTGGGGGTGGTGATTCGGCCTTGCGCCGTTGGGTGAAA
CAGCTCCAGCAGGAGCGCGATAGCGTGACCCCGAAGAGCAAGACGTTGACGCTTGAGCAGCAAAAGATCCAG
GAGCTAGAGGCTCGGATCAACCGGCTGGAGCGGGAGAAAGCGATCCTAAAAAAGGCTACCGCTCTCTTGATG
TCGGACGAACTCGATCGTACGCGCTGA
Translation:
MSDEQATTYVFRRVQTRGRGPGVGPRLQPYRRLPFAGGGDSALRRWVKQLQQERDSVTPKSKTLTLEQQKIQ
ELEARINRLEREKAILKKATALLMSDELDRTR*
AnnotationID:5470GeneID:5465
AnnotatorUID: danlee
Modification Date/Time: 2005-10-12 16:04:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|12698412|gb|AAK01526.1|  transposase A [Pseudomonas aeruginosa]
     Length=68
     Score =  121 bits (304),  Expect = 6e-27
     Identities = 62/71 (87%), Positives = 62/71 (87%), Gaps = 3/71 (4%)

gi|15597133|ref|NP_250627.1|  hypothetical protein PA1937 [Pseudomonas aeruginosa PAO1]
     Length=102
     Score =  117 bits (292),  Expect = 1e-25
     Identities = 61/68 (89%), Positives = 62/68 (91%), Gaps = 0/68 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:
possible frameshift with gene #6140


















    ReferenceID:15357




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28073




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5465
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196742
                           gb|AAG04368.1|AE004531_5
                           (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           111
                           62.16
                           66.66
                           16
                           275.0
     

     
     
7865
                           PA0979_tr
                           translation of PA0979
                           111
                           62.16
                           66.66
                           16
                           275.0
     

     
     
196741
                           gb|AAO47354.1|
                           (AY180395) putative transposase subunit [Pseudomonas aeruginosa]
                           111
                           62.16
                           66.66
                           16
                           275.0
     

     
     
196743
                           gb|AAA52747.1|
                           (U00100) unknown [Pseudomonas aeruginosa]
                           111
                           62.16
                           66.66
                           16
                           275.0
     

     
     
196744
                           gb|AAP82950.1|
                           (AY273870) putative transposase [Pseudomonas aeruginosa]
                           111
                           61.26
                           66.66
                           16
                           272.0
     

     






      

          
GC ORFID: 48467How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1937Glimmer Score: 

          
Start: 2462252Stop: 2461938

          
Length: 315


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1937 translation of PA1937Homolog Bit Score 117.0

          
Other Homologs:  t_PA0979 (ORF: BLASTX 114.0), t_RS05 (ORF: BLASTX 113.0)

          
GC ORF Sequence

           
GTGTCTGATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCCGCGGCCCTGGTGTTGGA 
CCAAGGCTACAGCCATATCGACGCCTGCCGTTCGCTGGGGGTGGTGATTCGGCCTTGCGCCGTTGGGTGAAA 
CAGCTCCAGCAGGAGCGCGATAGCGTGACCCCGAAGAGCAAGACGTTGACGCTTGAGCAGCAAAAGATCCAG 
GAGCTAGAGGCTCGGATCAACCGGCTGGAGCGGGAGAAAGCGATCCTAAAAAAGGCTACCGCTCTCTTGATG 
TCGGACGAACTCGATCGTACGCGCTGA