ViewGene
Locus Name:
GeneID:
Location:

GeneID:5463
TrivialName: PA14_62520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62520
PAO1 Ortholog Locus:
Sequence Length:177
Protein Length:58
Start: 5575782
Stop: 5575958
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO54500.1| (AE016859) hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 55/58 (94%), Positives = 56/58 (96%)
Sequence:
ATGTACATCTACCGACTGGTCCTGCTCCTGGTCGTGGGCATCTATCTCTTTTCCCCCGCCATCATGGACTGG
TGGATCGACCCCAACGGCGCCTGGTACCGCCCGTACCTGCTGTGGCTGATCCTCATCGTGGTCACTTTCATC
CTGCAGAGCCAGCGCGATGCTGACGAGCTTTAG
Translation:
MYIYRLVLLLVVGIYLFSPAIMDWWIDPNGAWYRPYLLWLILIVVTFILQSQRDADEL*
AnnotationID:5468GeneID:5463
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84323620|ref|ZP_00971689.1|  hypothetical protein Paer2_01005307 [Pseudomonas aeruginosa 2192]
 gi|84317396|ref|ZP_00965844.1|  hypothetical protein PaerC_01004880 [Pseudomonas aeruginosa C3719]
Length=58

 Score =  124 bits (311),  Expect = 1e-27
 Identities = 58/58 (100%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

gi|67158682|ref|ZP_00419543.1|  conserved hypothetical protein [Azotobacter vinelandii AvOP]
 gi|67084555|gb|EAM04037.1|  conserved hypothetical protein [Azotobacter vinelandii AvOP]
Length=58

 Score =  121 bits (304),  Expect = 7e-27
 Identities = 57/58 (98%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

gi|95112661|emb|CAK17389.1|  conserved hypothetical protein; putative signal peptide [Pseudomonas 
entomophila L48]
 gi|82739451|ref|ZP_00902253.1|  conserved hypothetical protein [Pseudomonas putida F1]
 gi|82713458|gb|EAP48570.1|  conserved hypothetical protein [Pseudomonas putida F1]
Length=58

 Score =  120 bits (301),  Expect = 2e-26
 Identities = 56/58 (96%), Positives = 57/58 (98%), Gaps = 0/58 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10923




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28069




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5463
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196737
                           gb|AAO54500.1|
                           (AE016859) hypothetical protein PSPTO0966 [Pseudomonas syringae pv. tomato str. DC3000]
                           58
                           94.82
                           96.55
                           0
                           295.0
     

     






      

          
GC ORFID: 48465How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold15_revised_gene251Glimmer Score: 

          
Start: 4839462Stop: 4839638

          
Length: 177


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold15_revised_gene2514Homolog Bit Score 118.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene251 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACATCTACCGACTGGTCCTGCTCCTGGTCGTGGGCATCTATCTCTTTTCCCCCGCCATCATGGACTGG 
TGGATCGACCCCAACGGCGCCTGGTACCGCCCGTACCTGCTGTGGCTGATCCTCATCGTGGTCACTTTCATC 
CTGCAGAGCCAGCGCGATGCTGACGAGCTTTAG