ViewGene
Locus Name:
GeneID:
Location:

GeneID:5461
TrivialName: PA14_13050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13050
PAO1 Ortholog Locus:PA3928
Sequence Length:171
Protein Length:56
Start: 1120390
Stop: 1120560
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07315.1|AE004810_7 (AE004810) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 55/56 (98%), Positives = 56/56 (100%)
Sequence:
ATGGTCCGTACGCCGAGTCATCCCGAACGAGATAACGCGGCCAAACCACCGCTCTGGCGACGCCTGGCCTGG
TTGGCGGGCATCTGGACCGCCAGCGTGCTGGCCCTGGGCGTCGCCGCCTGGCTGATGCGCCTGTTCATGAGC
GCGGCGGGGCTGGGCGTCCCGCACTGA
Translation:
MVRTPSHPERDNAAKPPLWRRLAWLAGIWTASVLALGVAAWLMRLFMSAAGLGVPH*
AnnotationID:5466GeneID:5461
AnnotatorUID: urbach
Modification Date/Time: 2004-03-24 14:02:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58092.1| (AE016872) conserved hypothetical protein [Pseudomonas syringae
          pv. tomato str. DC3000]
          Length = 55

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 1/50 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10919




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28065




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5461
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7861
                           PA3928_tr
                           translation of PA3928
                           56
                           98.21
                           99.99
                           0
                           296.0
     

     
     
196733
                           gb|AAG07315.1|AE004810_7
                           (AE004810) hypothetical protein PA3928 [Pseudomonas aeruginosa PAO1]
                           56
                           98.21
                           99.99
                           0
                           296.0
     

     






      

          
GC ORFID: 48463How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3928Glimmer Score: 

          
Start: 3833548Stop: 3833378

          
Length: 171


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3928 translation of PA3928Homolog Bit Score 118.0

          
Other Homologs:  t_PA3928 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCCGTACGCCGAGTCATCCCGAACGAGATAACGCGGCCAAACCACCGCTCTGGCGACGCCTGGCCTGG 
TTGGCGGGCATCTGGACCGCCAGCGTGCTGGCCCTGGGCGTCGCCGCCTGGCTGATGCGCCTGTTCATGAGC 
GCGGCGGGGCTGGGCGTCCCGCACTGA