ViewGene
Locus Name:
GeneID:
Location:

GeneID:5456
TrivialName: PA14_45340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45340
PAO1 Ortholog Locus:PA1478
Sequence Length:177
Protein Length:58
Start: 4040389
Stop: 4040213
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04867.1|AE004577_2 (AE004577) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 58/58 (100%), Positives = 58/58 (100%)
Sequence:
ATGAGCTTCGAATCGTTCGGCGACTTCCTCGCCATGGGCCATCACGGCCCCTACGTCTGGTCGGCCTACGGC
ATCAGCCTGCTGGTGCTGGCGATCAATGTCGCCGAGCCGCTGCTGGCCCGGCGCCGCTACCTGCAAGAAGAG
GCGCGTCGTCTGCGCCGGGAGGCCCAGCAGTGA
Translation:
MSFESFGDFLAMGHHGPYVWSAYGISLLVLAINVAEPLLARRRYLQEEARRLRREAQQ*
AnnotationID:5461GeneID:5456
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 17:05:11
Gene Name:
Confidence Code:3
GeneProduct:putative heme exporter protein
Cell Localization:()
Synonyms:PA1478
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04995
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69903.1|AE016629_5 (AE016790) cytochrome c-type biogenesis protein CcmD [Pseudomonas
          putida KT2440]
          Length = 58

 Score = 99.0 bits (245), Expect = 6e-21
 Identities = 48/58 (82%), Positives = 50/58 (86%)

>emb|CAA88016.1| (Z47979) inner membrane protein [Pseudomonas fluorescens]
          Length = 58

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 44/58 (75%), Positives = 50/58 (86%)

>gb|AAO57103.1| (AE016869) heme exporter protein CcmD [Pseudomonas syringae pv.
          tomato str. DC3000]
          Length = 58

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 41/57 (71%), Positives = 51/57 (89%)








 
Structural Features:
pfam04995, CcmD, Heme exporter protein D (CcmD).
CD-Length = 46 residues, 100.0% aligned
Score = 51.8 bits (124), Expect = 2e-08
Identities = 25/46 (54%), Positives = 31/46 (67%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10909




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28055




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36498




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5456_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5456
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7856
                           PA1478_tr
                           translation of PA1478
                           58
                           99.99
                           99.99
                           0
                           297.0
     

     
     
196726
                           gb|AAG04867.1|AE004577_2
                           (AE004577) hypothetical protein PA1478 [Pseudomonas aeruginosa PAO1]
                           58
                           99.99
                           99.99
                           0
                           297.0
     

     






      

          
GC ORFID: 48458How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1478Glimmer Score: 

          
Start: 913520Stop: 913696

          
Length: 177


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1478 translation of PA1478Homolog Bit Score 119.0

          
Other Homologs:  t_PA1478 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTTCGAATCGTTCGGCGACTTCCTCGCCATGGGCCATCACGGCCCCTACGTCTGGTCGGCCTACGGC 
ATCAGCCTGCTGGTGCTGGCGATCAATGTCGCCGAGCCGCTGCTGGCCCGGCGCCGCTACCTGCAAGAAGAG 
GCGCGTCGTCTGCGCCGGGAGGCCCAGCAGTGA