ViewGene
Locus Name:
GeneID:
Location:

GeneID:5455
TrivialName: PA14_49210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49210
PAO1 Ortholog Locus:PA1177
Sequence Length:168
Protein Length:55
Start: 4372229
Stop: 4372396
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04566.1|AE004547_12 (AE004547) periplasmic nitrate reductase protein NapE [Pseudomonas aeruginosa PAO1]
Identities = 55/55 (100%), Positives = 55/55 (100%)
Sequence:
ATGAACGAACAACCCGACCAGGGACGCGTCAAGGGCATGGAAGCCAGGCTCTTCCTGTTCCTCGTGATCTGC
CTGTTCCCGCTGCTGTCCGTCGCCCTGGTCGGCGGCTTCGGTTTCTGCGTCTGGATGTACCAGCTACTGGCC
GGCCCGCCCGGGCCGCCGGCCTGA
Translation:
MNEQPDQGRVKGMEARLFLFLVICLFPLLSVALVGGFGFCVWMYQLLAGPPGPPA*
AnnotationID:5460GeneID:5455
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 14:02:46
Gene Name:napE
Confidence Code:2
GeneProduct:periplasmic nitrate reductase protein NapE
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Nitrogen metabolism
Homology:






 
Structural Features:






   
Genomic Context:
First of six ORF cluster: napEFDABC cluster similar in gene organization to periplasmic nitrate-reducing system of Rhodobacter sphaeroides






   
Comment:


















    ReferenceID:10907




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16966




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:napE_CDS.cgi


    		




 
URL:

















    ReferenceID:28053




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5455
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7855
                           PA1177_tr
                           translation of PA1177
                           55
                           99.99
                           99.99
                           0
                           297.0
     

     
     
196725
                           gb|AAG04566.1|AE004547_12
                           (AE004547) periplasmic nitrate reductase protein NapE [Pseudomonas aeruginosa PAO1]
                           55
                           99.99
                           99.99
                           0
                           297.0
     

     






      

          
GC ORFID: 48457How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1177Glimmer Score: 

          
Start: 581679Stop: 581512

          
Length: 168


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1177 translation of PA1177Homolog Bit Score 119.0

          
Other Homologs:  t_PA1177 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGAACAACCCGACCAGGGACGCGTCAAGGGCATGGAAGCCAGGCTCTTCCTGTTCCTCGTGATCTGC 
CTGTTCCCGCTGCTGTCCGTCGCCCTGGTCGGCGGCTTCGGTTTCTGCGTCTGGATGTACCAGCTACTGGCC 
GGCCCGCCCGGGCCGCCGGCCTGA