ViewGene
Locus Name:
GeneID:
Location:

GeneID:5454
TrivialName: PA14_45260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45260
PAO1 Ortholog Locus:
Sequence Length:435
Protein Length:144
Start: 4035513
Stop: 4035079
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69899.1|AE016629_1 (AE016790) hypothetical protein [Pseudomonas putida KT2440]
Identities = 62/136 (45%), Positives = 76/136 (55%), Gaps = 10/136 (7%)
Sequence:
TTGGCGGGAGGTGCGGCGGTGAAGGCGAAGTATCTGGGTCTGGCGATTCTCCTGGGCGGTCTCGGCGGGTGC
GTGGTGCATCCGCCGCAGACCAGCGAACCGCCGGCCTCGCTGCCGCCGCAAAGCCAGCCGCAGCCCGGTCCG
TCCAGCGCGCCCGGCGCCACCCCGCCGCGCATCACCCCGCAACCGCAGACTCCAGCGCAGCCCAGCCGCTCG
CGTCCGCAGTTCGCCCCGCCGCCAGGCGGCAAGGGCGTCTGGGACGGCAGCCTGGGGGTCTATGTGATCCGC
GGCGAGCGCGATCTCTACTACCGCCAGCGTACCTACTACCGCTGGGACGGCGGCTGGTTCTGGTCCACCAGC
CCGCAGGGTCCCTGGACCGAGACCGACGCCCGCGGCATCCCGCCCGGTCTCAGCCGGCGCTACGCCAATCCA
TGA
Translation:
MAGGAAVKAKYLGLAILLGGLGGCVVHPPQTSEPPASLPPQSQPQPGPSSAPGATPPRITPQPQTPAQPSRS
RPQFAPPPGGKGVWDGSLGVYVIRGERDLYYRQRTYYRWDGGWFWSTSPQGPWTETDARGIPPGLSRRYANP
*
AnnotationID:5459GeneID:5454
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84328400|ref|ZP_00976407.1|  hypothetical protein Paer2_01000465 [Pseudomonas aeruginosa 2192]
 gi|84321875|ref|ZP_00970228.1|  hypothetical protein PaerC_01000453 [Pseudomonas aeruginosa C3719]
Length=138

 Score =  171 bits (432),  Expect = 1e-41
 Identities = 137/138 (99%), Positives = 138/138 (100%), Gaps = 0/138 (0%)

gi|94415050|ref|ZP_01294899.1|  hypothetical protein PaerP_01003158 [Pseudomonas aeruginosa PA7]
Length=137

 Score =  167 bits (424),  Expect = 9e-41
 Identities = 110/138 (79%), Positives = 112/138 (81%), Gaps = 2/138 (1%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15351




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28051




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5454
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196723
                           gb|AAN69899.1|AE016629_1
                           (AE016790) hypothetical protein [Pseudomonas putida KT2440]
                           149
                           41.61
                           53.69
                           16
                           311.0
     

     
     
196724
                           gb|AAO57098.1|
                           (AE016869) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           155
                           39.35
                           52.90
                           31
                           307.0
     

     






      

          
GC ORFID: 48456How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold13_revised_gene223Glimmer Score: 

          
Start: 918396Stop: 918830

          
Length: 435


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold13_revised_gene2234Homolog Bit Score 120.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene223 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGGCGGGAGGTGCGGCGGTGAAGGCGAAGTATCTGGGTCTGGCGATTCTCCTGGGCGGTCTCGGCGGGTGC 
GTGGTGCATCCGCCGCAGACCAGCGAACCGCCGGCCTCGCTGCCGCCGCAAAGCCAGCCGCAGCCCGGTCCG 
TCCAGCGCGCCCGGCGCCACCCCGCCGCGCATCACCCCGCAACCGCAGACTCCAGCGCAGCCCAGCCGCTCG 
CGTCCGCAGTTCGCCCCGCCGCCAGGCGGCAAGGGCGTCTGGGACGGCAGCCTGGGGGTCTATGTGATCCGC 
GGCGAGCGCGATCTCTACTACCGCCAGCGTACCTACTACCGCTGGGACGGCGGCTGGTTCTGGTCCACCAGC 
CCGCAGGGTCCCTGGACCGAGACCGACGCCCGCGGCATCCCGCCCGGTCTCAGCCGGCGCTACGCCAATCCA 
TGA